1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcctctatggtttttccttctttcagtatgtaaaaatatatttcttttatttgagttcaagttcatttgaatcatcatattctgaaactttattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACATATTCTTGCGAGGCTACCCCCTAGGGTTCACTCTGTCTACTACCGAGAT
species | Vitis vinifera |
transcript | Vv13s0019g04410.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|161714040|gb|FC064115.1|FC064115
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCCTTTCAAG GGTTGAATATCAGTCTAGACCATCTATEST: gi|351015486|gb|FQ447315.1|FQ447315
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTAT
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|37187617|gb|CF606970.1|CF606970
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|349824067|gb|FQ417454.1|FQ417454
genomic: CTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|351031867|gb|FQ460124.1|FQ460124
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|352790365|gb|FQ478005.1|FQ478005
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|349812777|gb|FQ410419.1|FQ410419
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|349816667|gb|FQ404914.1|FQ404914
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|77585403|gb|DV221793.1|DV221793
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|161721124|gb|FC071011.1|FC071011
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTEST: gi|351051855|gb|FQ455269.1|FQ455269
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCT
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|351045790|gb|FQ440975.1|FQ440975
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTCCAAACAEST: gi|349811345|gb|FQ407571.1|FQ407571
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|351048526|gb|FQ448800.1|FQ448800
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|351053182|gb|FQ455639.1|FQ455639
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCGGTGGTGTGTCTTCTTTCAAACAEST: gi|349807244|gb|FQ401236.1|FQ401236
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACAEST: gi|110414535|gb|EC980369.1|EC980369
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
EST: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAG GGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
genomic: CATTACAAGTTGGTTCATGCTGGTGCCCGGCATAAGGGAATCTTTTCAAGgtaaggttct ... tattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACA
tttatttgagttcaagttcatttgaatcatcatattctgaaactttattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACATATTCTTGCGAGGCTACCCCCTAGGGTTCACTCTGTCTACTACCGAGAT
ctttatttt CT-rich tract
tgaaactttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctctatggtttttccttctttcagtatgtaaaaatatatttcttttatttgagttcaagttcatttgaatcatcatattctgaaactttattttgcagGGTTGAATATCAGTCTAGACCATCTATCAGTGGTGTGTCTTCTTTCAAACATATTCTTGCGAGGCTACCCCCTAGGGTTCACTCTGTCTACTACCGAGAT
- ctctatg
- - - - - - - tccttct
- - - - - - - - - - - -cagtatg
- - - - - - - - - - - - - - - -aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaac