1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attttattgaagtttaaaacctttgaagtgatgattttctttattttcatgtctaaaattttctcacggaactgatgcaaccctctatattttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAG
species | Vitis vinifera |
transcript | Vv13s0019g04090.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAA GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTEST: gi|161718960|gb|FC066380.1|FC066380
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTT
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAG GACAAGTGGTCTTCTGCCTATGATTGCEST: gi|161712977|gb|FC062103.1|FC062103
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGC
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAG GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATC-ATTCAAEST: gi|110426829|gb|EC993253.1|EC993253
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAG GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAEST: gi|161720059|gb|FC065103.1|FC065103
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAA GACAAGTGGTCTTCTGCCTATGATTGCAAA-CCGTTCTTTTATC-ATTCAAEST: gi|110711177|gb|EE087407.1|EE087407
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAG GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATC-ATTCAAEST: gi|28961969|gb|CB341008.1|CB341008
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
EST: TCCATCC-AATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAG GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCCTTTATCCATTCAAEST: gi|110686046|gb|EE063296.1|EE063296
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
EST: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAG GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
genomic: TCCATCCAAATATTGATCAGTTTGGCAACATTTGTCTTGACATCCTTCAGgtataactca ... tttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAA
ttcatgtctaaaattttctcacggaactgatgcaaccctctatattttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAG
tatattttggtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttattgaagtttaaaacctttgaagtgatgattttctttattttcatgtctaaaattttctcacggaactgatgcaaccctctatattttggtatagGACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAG
- - - - - - - taaaacc
- - - - - - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcta