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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcataaaatttctatcttacatatatgaatccttctgaattccagaaatattgactgaaaaggtgtttcccaccctctttttcagTCAGGAAAAGTCCCATTTGTGTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCT

Basic information

species Vitis vinifera
transcript Vv13s0019g04070.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G07110.1 (Glycine max), 3'ss of exon 4
gtaagttcataaaatttctatct-tacatatatgaatccttctgaattccag--aaatattgactgaaaaggtgtttcccaccctctttttcagTCA---GGAAAAGTCCCATTTGTGTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCT---
||   ||    | || | ||| | || ||||||  ||   | |  ||   ||   | |||||          || |          |||| || | |   ||||||||  | ||||| ||    |||||||| || |||||||||||||| ||||||||||||||  | |||||| |  |  | ||| | |  ||     
gtcttttatatatatatatatatatatatatatatatatatatatatattagttgattattgtagatggttttgatcgatgggtgattttgcatttacagGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTGTGCTAGCCATTTTTCATATCCTGCAATGCATTGTAACACTGA

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G26090.1 (Glycine max), 3'ss of exon 4
gtaagttcataaaatttctatcttacatatatgaatccttctgaattccagaaatattgactg----aaaaggtgtttcccacc--ctctttttcagTCAGGAAAAGTCCCATTTGTGTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCT---
 | |||   | | |  |  |    |    ||  | |       |||  ||    | |  | ||    | || || ||          | |   |  |   ||||||||  | ||||| ||    |||||||| || |||||||||||||| |||||| |||||||| | |||||| |  |  | ||| |    ||     
attagtgtctgatacattaaagcaaggcttaaaattaaggtgaaatagcaaggttgtccattgttgtagaaagttttgatggatgattttgcatttgcagGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTATGCTAGCTGTTTTTCATATCCTACAATGCATTATAACAATAG

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA16G26100.1 (Glycine max), 3'ss of exon 4
gtaagttcataaaatttctat---cttacatatatgaatccttctgaat-tccagaaatattgactgaaaaggtgtttcccaccctctttttcagTCA---GGAAAAGTCCCATTTGTGTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCT---
   | || |  | |||| |||    ||  |  | ||     || |  || |    |  || | | || | | |  |||         |||| || |     ||||||||  | ||||| ||    |||||||| || |||||||||||||| ||||||||||| ||  | |||||| |  |  | ||| | |  ||     
-gcatttaagtatatttttatatatttttaattttggccaattttatatatttgtagttaattattgtagatggttttgatgggtgattttgcatttgcagGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTGTGCTGGCCATTTTTCATATTCTACAATGCATTGTAACACTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctgaattccagaaatattgactgaaaaggtgtttcccaccctctttttcagTCAGGAAAAGTCCCATTTGTGTCTTACTATGGGATCCATCAGCTCCATATATTTATCTTTGTGCTAGCTCTCTTTCATGTGATCTACTGCGTGGCCACCT
                  tattgac  putative branch site (score: 2)
                                 tgtttcccaccctctt  putative PPT
             agaaatatt  TA-rich tract