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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaagttcatataatttctatattatattaagccttctgacttccagaaatattattgactgaaaaaggtgtttcccaccctcttttcctgcagGGAAAAGTCCCATTAGTGTCTTCCTATGGGATCCATCAACTCCATATATTCATCTTTGTGTTAGCTCTCTTTCATGTGATTTACTGTGTGGCCACCTTGG

Basic information

species Vitis vinifera
transcript Vv13s0019g04060.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G07110.1 (Glycine max), 3'ss of exon 4
---------gtaattaagttcatata-atttctatat-tatat-taagccttctgacttccagaaatattattgactgaaaaaggtgtttcccaccctcttttcctgcagGGAAAAGTCCCATTAGTGTCTTCCTATGGGATCCATCAACTCCATATATTCATCTTTGTGTTAGCTCTCTTTCATGTGATTTACTGTGTGGCCACCTTGG
          ||  ||  |  ||||| || | ||||| ||||| ||       ||| |     | ||  | ||||  ||     |  |||  ||           | |||||||||||  | || || ||  | |||||||| || || ||||||||||||||||||||| ||||  | |||||| |  |  | ||  | |  ||  || 
gtcttttatatatatatatatatatatatatatatatatatatatatattagttgattattgtagatggttttgatcgatgggtg-attttgcatt---------tacagGGAAAAGTTGCTTTTGTTTCAGCATATGGGATTCACCAGCTCCATATATTCATCTTTGTGCTAGCCATTTTTCATATCCTGCAATGCATTGTAACACTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttccagaaatattattgactgaaaaaggtgtttcccaccctcttttcctgcagGGAAAAGTCCCATTAGTGTCTTCCTATGGGATCCATCAACTCCATATATTCATCTTTGTGTTAGCTCTCTTTCATGTGATTTACTGTGTGGCCACCTTGG
              tattgac  putative branch site (score: 2)
                              tgtttcccaccctctt  putative PPT
      agaaatattattga  TA-rich tract