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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcccttctgagaccatgaaaagcgagtttgattttctgaataaattgttttattgagtagttctaggatcctaagagttgtgtgcgtatgttttttatttttttgaaattatattttatttgtttgtctacagATAACAGTCGATGGGACAGTTGTTACGGAGCCCAAGACAATTCTCAG

Basic information

species Vitis vinifera
transcript Vv13s0019g04000.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161707605|gb|FC056021.1|FC056021
EST:     ATGGCTACAGCGGATCAACAAAGGACAG                         ATAACAGTCGATGGGACAGTTGTTACGGAGCCCAAGACAATTCTCAG
genomic: ATGGCTACAGCGGATCAACAAAGGACAGgttcccttct ... ttgtctacagATAACAGTCGATGGGACAGTTGTTACGGAGCCCAAGACAATTCTCAG
EST: gi|161716883|gb|FC068117.1|FC068117
EST:     ATGGCTACAGCGGATCAACAAAGGACAG                         ATAACAGTCGATGGGACAGTTGTTACGGAGCCCAAGACAATTCTCAG
genomic: ATGGCTACAGCGGATCAACAAAGGACAGgttcccttct ... ttgtctacagATAACAGTCGATGGGACAGTTGTTACGGAGCCCAAGACAATTCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtgcgtatgttttttatttttttgaaattatattttatttgtttgtctacagATAACAGTCGATGGGACAGTTGTTACGGAGCCCAAGACAATTCTCAG
                                        tttgttt  CT-rich tract
        tatgttttttattttt  TA-rich tract