1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagaaccgatatacaacttttaggtgtgttttttacactctttgaactgaaatgacagtgtttcgtatgctatgtgtacctgtgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAG
species | Vitis vinifera |
transcript | Vv13s0019g03860.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTG TTGGTAGAATTGAAAGAAGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCEST: gi|110389923|gb|EC954797.1|EC954797
genomic: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTGgtgagaaccg ... tgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGC
EST: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTG TTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCEST: gi|30325219|gb|CD008481.1|CD008481
genomic: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTGgtgagaaccg ... tgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGC
EST: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTG TTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCEST: gi|77577878|gb|DV217689.1|DV217689
genomic: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTGgtgagaaccg ... tgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGC
EST: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTG TTGGTAGAATTGAAAGAAGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCEST: gi|110430091|gb|EC996620.1|EC996620
genomic: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTGgtgagaaccg ... tgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGC
EST: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTG TTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGC
genomic: AGTATGTAGACACAGTCACGCCTCAATACAAACCTAAATTTGATGCATTGgtgagaaccg ... tgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaaccgatatacaacttttaggtgtgttttttacactctttgaactgaaatgacagtgtttcgtatgctatgtgtacctgtgagttacagTTGGTAGAATTGAAAGAGGCAGAGGAGAAATCCCTGAAGGAATCTGAGCGCCTGGAGAAGGAGATTGCTGAAGTCCAAGAGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG