1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgcatgttggctcttgaaaggcatatcagcactcagcagaaacgattacttgatttttacttgatgcttgcgacttccatggtgtgctctttcttgtagGTAATTCAGTCCAATTAAATATGGTTGGCTTCAAGATGAGACTATCATCCTGGAGTTCCAAAATACAAGTTCTCAGCTTGAGTGTCAGCTTCCATCCCTC
species | Vitis vinifera |
transcript | Vv13s0019g03660.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
attacttgatttttacttgatgcttgcgacttccatggtgtgctctttcttgtagGTAATTCAGTCCAATTAAATATGGTTGGCTTCAAGATGAGACTATCATCCTGGAGTTCCAAAATACAAGTTCTCAGCTTGAGTGTCAGCTTCCATCCCTC
acttgat putative branch site (score: 5)
tgctctttctt putative PPT
ttgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatgttggctcttgaaaggcatatcagcactcagcagaaacgattacttgatttttacttgatgcttgcgacttccatggtgtgctctttcttgtagGTAATTCAGTCCAATTAAATATGGTTGGCTTCAAGATGAGACTATCATCCTGGAGTTCCAAAATACAAGTTCTCAGCTTGAGTGTCAGCTTCCATCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- gcatgtt
- - - - - gctcttg
- - - - - - - - -aaaggca
- - - - - - - - - - - - - - -gcactca
- - - - - - - - - - - - - - - - - - -cagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggt