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...tttttttatctatttatttccttgattatttgcttgtttgtgttgtgtattcttgtaagcttatgttttaatgatgttagccaattgtaaacttggacagGGTGATACCAGGGGATCTGCTAGAGGTGGAGATGGATCTGCTAGAAGGGATGCAATAGGAAGTCAACCTGGTCCAAATGCACAG
species | Vitis vinifera |
transcript | Vv13s0019g03600.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|110685257|gb|EE063468.1|EE063468
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|110685257|gb|EE063468.1|EE063468
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|110690518|gb|EE067687.1|EE067687
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|110690518|gb|EE067687.1|EE067687
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|110690518|gb|EE067687.1|EE067687
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|22014931|gb|BQ799965.1|BQ799965
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|22014931|gb|BQ799965.1|BQ799965
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|22014931|gb|BQ799965.1|BQ799965
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAG CEST: gi|110425488|gb|EC991873.1|EC991873
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGgtaataattc ... acttggacag-
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGCTGGAGEST: gi|22013467|gb|BQ798501.1|BQ798501
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATAT--AGA----GAGgtaataattc ... acttg
EST: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATATAGAGAGCTGGAG
genomic: TTGAAGATTATATTGAACCACTAAAGGTGTACCTGCAGAGATAT--AGA----GAGgtaataattc ... acttg
tgtattcttgtaagcttatgttttaatgatgttagccaattgtaaacttggacagGGTGATACCAGGGGATCTGCTAGAGGTGGAGATGGATCTGCTAGAAGGGATGCAATAGGAAGTCAACCTGGTCCAAATGCACAG
ttttaat putative branch site (score: 3)
ttatgttttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttttatctatttatttccttgattatttgcttgtttgtgttgtgtattcttgtaagcttatgttttaatgatgttagccaattgtaaacttggacagGGTGATACCAGGGGATCTGCTAGAGGTGGAGATGGATCTGCTAGAAGGGATGCAATAGGAAGTCAACCTGGTCCAAATGCACAG
- - - - - - - - -ttccttg
- - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagcca