Sequence
atgc intronic sequence ATGC exonic sequence...ttttccagagagtgatacctcatttacttgtgaatgaaggtcaaaagaagttttatttttactcagtcttttcactattggttttatatttgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G06930.1 (Glycine max), 3'ss of exon 4
------ttttccagagag------tgatacctca-tttacttgtgaatgaagg---tcaaaagaagttttatttttactcagtcttttcactattggt-tttata------tttgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
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gtataatttgattgagtactcatttgtgacttcaattttcttctcgataaagagttctgtattttgtttttaattgacttaggaattgcaattgtgatgtttgtaatatggtgcattctgcagGTAATGACTTGCAGGCCAAGGTCAGATCTTTTCATGAATCTTCCAGCTCTGCGCAAACTTGACAACATGCTTCTT
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G34690.1 (Glycine max), 3'ss of exon 2
------ttttccagagagtgatacctcat--ttacttgtgaatgaaggtcaaaagaagttttatttttactcagtcttttcactattggttttata-tttgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
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gtaaaattggattgagtcttaattttaatgatgaactctgattttattcaaaagggggaattgatgaatcatgaatctatgatgttttctaatatggtgcattctgcagGTAATGACTTGCAGGCCTAGGGCAGATATTTTTATCAATCTTCCAGCTCTCCGCAAACTTGACAACATGCTTCTC
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G03610.1 (Glycine max), 3'ss of exon 2
-------ttttccagagagtgatacct-catttacttgtgaatgaaggtcaaaagaagttttatttttactcagtcttttcactattggttttatatt-tgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
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gtaaaattggactgaatcttaatttcaatgctgaactctgattttat-tcaaaaggggaattaatgaatcatgaatttatga-tgtttctaatatggtgcattctgcagGTAATGACTTGCAGGCCTAGGGCAGATATTTTTACCAATCTTCCAGCTCTTCGCAAACTTGACAACATGCTTCTC
upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G41980.1 (Glycine max), 3'ss of exon 3
-----------ttttccagagagt-gatacctca-tttacttgtgaatgaagg----tcaaaagaagttttatttttactcagtcttttcactattggtttt-------atatttgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
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gtataattggattgagtactcatttgttacttcaattttcttctcaataaagagctctctactttgattttaatta-acacagcagttacagttgtgatgtttgtaaccatgtgtattctgcagGTAATGACTTGCAGGCCAAGGTCAGATCTTTTCATGAATCTTCCAGCTCTGCACAAACTTGACAATATGCTTCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaagttttatttttactcagtcttttcactattggttttatatttgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
tattggttttatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttccagagagtgatacctcatttacttgtgaatgaaggtcaaaagaagttttatttttactcagtcttttcactattggttttatatttgtcattcagGTAATGACTTGCAGACCACGATCGGATATTTTTATCAATCTCCCAGCTCTGCGTAAACTCGATAACATGCTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - acctcat
- - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctattgg