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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactggagaacatgttatgttctaattatgtcctttctaactcactttttctcgaggaagcgttttgatttaggcaacataacttacaaattttgtgtatcattccttgataaaactttcctgcttaatctgcatgtagGTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCCATACTAAAGATTGTTGGCTACAACTTCTCATGTATTAACTCTAAATCAA

Basic information

species Vitis vinifera
transcript Vv13s0019g01470.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709477|gb|FC059722.1|FC059722
EST:     TTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGG                         GTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCACTAGCC
genomic: TTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGGgtatgactgg ... ctgcatgtagGTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCC
EST: gi|33407399|gb|CF213026.1|CF213026
EST:     TTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGG                         GTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCC
genomic: TTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGGgtatgactgg ... ctgcatgtagGTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCC
EST: gi|110713125|gb|EE088770.1|EE088770
EST:     TTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGG                         GTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCC
genomic: TTGGGTTCCATGGTTCCAGATCTTCTCAATTTCCTCGGGATGATAAAGGGgtatgactgg ... ctgcatgtagGTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaaattttgtgtatcattccttgataaaactttcctgcttaatctgcatgtagGTATTGATTCACAATGGCAGTCACTTGGCAAGCACATACTGTGCCCTAGCCATACTAAAGATTGTTGGCTACAACTTCTCATGTATTAACTCTAAATCAA
                         ataaaacttt  TA-rich tract