Sequence
atgc intronic sequence ATGC exonic sequence...taaaagaaaaaagaaaaaaaaaaagaaaaaggaaaaacaaagtcaacaatttgtgtcgtatgtctggttgggagcataatataagtgtttctatatgtagGCATTGAAAAATGGTGACTCCTTGATGAATATTGGAAAACTGAAGGAAGCATTGCCCTATTATGAGAAAGTCATGGATAAGTTGACATTTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g01030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G12160.1 (Glycine max), 3'ss of exon 3
taaaagaaaaaagaaaaaaaaaaagaaaaaggaaaaacaaagtcaacaatttgtgtcgtatgtctggttgggagcataatataa----------gtgtttc-tatatgtagGCATTGAAAAATGGTGACTCCTTGATGAATATTGGAAAACTGAAGGAAGCATTGCCCTATTATGAGAAAGTCATGGATAAGTTGACATTTCAG
|||| || | | | | | ||||| | | | | |||| ||||||| | | | ||| | ||||||||||| ||||||||| || |||||| | ||||| |||||||||||||||||||| |||||||| || |||||||| || || || |||
-----------tttaaaatttaattagttatttgtctcttctttagttgtttgtttgttgcttaaaaatccaagcacaatataatctctaaattgcatatgatatttatagGCATTGAAGGATGGTGACTTATTAATGAATGTGGGAAAGCTGAAGGAAGCATTGCCCTACTATGAGAAGGTTATGGATAAATTAACCTTCCAG
upper sequence: Vv13s0019g01030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G04370.2 (Glycine max), 3'ss of exon 4
taaaagaaaaaagaaaaaaaaaaagaaaaaggaaaaacaaagtcaacaatt-tgtgtcgtatgtctggttgggag---cataatataagtgtttc------tatatgtagGCATTGAAAAATGGTGACTCCTTGATGAATATTGGAAAACTGAAGGAAGCATTGCCCTATTATGAGAAAGTCATGGATAAGTTGACATTTCAG-------
| || || | | | | | || ||||| | | | |||||| | || | ||| | ||||||| ||| ||||||||| || |||||| | ||||| |||||||||||||||||| | |||||||| ||||||||||| || || || |||
----------atttttaatttaattagttgtgtgcctcttctttagttgttgtgtgttgcttcaaaatcccagcacttcataatctctaaattgcatatgatatttatagGCATCGAAGGATGGTGACTTATTAATGAATGTGGGAAAGCTGAAGGAAGCATTGCCCAACTATGAGAAGGTCATGGATAAATTAACCTTCCAGGGAAATG
upper sequence: Vv13s0019g01030.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G04370.1 (Glycine max), 3'ss of exon 4
taaaagaaaaaagaaaaaaaaaaagaaaaaggaaaaacaaagtcaacaatt-tgtgtcgtatgtctggttgggag---cataatataagtgtttc------tatatgtagGCATTGAAAAATGGTGACTCCTTGATGAATATTGGAAAACTGAAGGAAGCATTGCCCTATTATGAGAAAGTCATGGATAAGTTGACATTTCAG
| || || | | | | | || ||||| | | | |||||| | || | ||| | ||||||| ||| ||||||||| || |||||| | ||||| |||||||||||||||||| | ||||||||
----------atttttaatttaattagttgtgtgcctcttctttagttgttgtgtgttgcttcaaaatcccagcacttcataatctctaaattgcatatgatatttatagGCATCGAAGGATGGTGACTTATTAATGAATGTGGGAAAGCTGAAGGAAGCATTGCCCAACTATGAGAAG------------------------ atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaatttgtgtcgtatgtctggttgggagcataatataagtgtttctatatgtagGCATTGAAAAATGGTGACTCCTTGATGAATATTGGAAAACTGAAGGAAGCATTGCCCTATTATGAGAAAGTCATGGATAAGTTGACATTTCAG
tgtttct CT-rich tract
ataatataagtgtttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
taaaagaaaaaagaaaaaaaaaaagaaaaaggaaaaacaaagtcaacaatttgtgtcgtatgtctggttgggagcataatataagtgtttctatatgtagGCATTGAAAAATGGTGACTCCTTGATGAATATTGGAAAACTGAAGGAAGCATTGCCCTATTATGAGAAAGTCATGGATAAGTTGACATTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- -aagaaaa
- - - - - - -aaaaaaa
- - - - - - - - - - - - gaaaaag
- - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - tcaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttggg