Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG

Basic information

species Vitis vinifera
transcript Vv13s0019g00530.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G018228_T04 (Zea mays), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgatt-ttattttgctctac-agGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                                          |   | || | |   ||    ||    |||   || | |     |||| | |      ||     |||||| ||||| | || ||  |||||||||||| ||||| ||||| || ||||| |||||  |||| ||||| || || || |||||||||||||| || |||||||| ||||| || || ||
----------------------------------------gttagccctcctcaacctta---tgcccatttgaattgctt-----cattctga---ggatacgcccctgattattattgttctatattagGTTACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G083497_T04 (Zea mays), 3'ss of exon 1
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                                            ||  |  | | | | |         |||   ||  | |  |   |        |||||  | | |  |  ||| ||  |    ||| |||||||| ||||| ||||| || ||||| |||||  |||| |||||||| || |||||||| || |||||||||||||| || || || || |||||
-------------------------------------------gttagttctcaatctcgtgcc--ccatttcaattggcagcat---tccgaggatacgtacctgattagtgctatattatt----agGATACATTGGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATTGTGGTGGAACTGAACGGCAGACTAAACAAATGCGGTGTAATTAGCCCCCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G328578_T01 (Zea mays), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgatt-ttattttgctctac-agGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                                          |   | || | |   ||    ||    |||   || | |     |||| | |      ||  |  |||||| ||||| | || ||  ||| |||||| | ||||| ||||| || ||||| |||||  |||| ||||| || || || |||||||||||||| || |||||||| ||||| || || ||
----------------------------------------gttagccctcctcaacctta---tgcccatttgaattgctt-----cattctga---ggatacgtccctgattattattgttctatattagGCTACATTAGCGAGTTCGAGTACGTGGATGACCACAGAGCTGGGAAGATCGTGGTGGAGCTGAATGGAAGACTGAATAAATGTGGTGTTATTAGCCCACG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G10950.1 (Glycine max), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                              || |   |||  |  ||||||||  |||   | |   |   |||| |       ||| | ||  ||||  | ||||  ||  || ||| || | |  ||| |||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||| ||||||| ||||| ||||||||||||||||| ||||| ||
------------------------------gtatttgtttgttaatcttcttttttttaataatagctcaatttggt-------tac-tcttggttcatctgtttt--tgccttgattgtgttttctagGGTACATTGGAGAGTTTGAGTACGTTGATGATCACAGAGCTGGAAAAATTGTTGTTGAATTGAATGGTAGACTGAACAAATGTGGGGTTATTAGTCCGCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA07G38520.1 (Glycine max), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                 |  || ||  | |  |  || ||| | || || ||| || ||  ||| || |  |||||    ||   | ||| || ||   || ||    ||||||| | ||       ||| ||||||||||||||||||||||||||||| |||||| |||| || || || |||||| |||| || ||||| ||||| ||||||||||| ||||||||
----------------gtatatctctcagtaatcaaagtttttatttttattttctgtttaattattatagtttgtgtattg---aaattgttgtt---gtgttcgggtgattttttgtt------tagGATACATTGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G02200.1 (Glycine max), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                          |  | | ||    |  |     | || | |||   ||| ||| ||||| ||   | |||  |||   |    | | || |  |    | ||||   | |  ||| ||||| ||||||||||||||||||||||| |||||| |||| || || || |||||| |||| || ||||| ||||| ||||||||||| ||||||||
--------------------------gtatatctcttagtaatcaaagttttgatttt---attatttatttttatttagtttgtgtattgaaaaatgc-tgttgtgttcggatgattta--tgtgtagGATACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttc----tttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                  | |||||  |     || |||||  || |  |    || | ||    ||  |   |  | |  || ||| | || | || ||  | |  |||  ||||  | |  |||| |  ||| |||||||| ||||| |||||||||||||| |||||| |||| || || || |||||| ||||||| || || || || ||||||||||| || || ||
------------------gtatttctcaacacctctatttttgttcccccctaattgaattgaatataatagataataggaacttgttt-cagtgttgttgtcatgatttg-tgatggtgtggtgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGCAGGCTGAATAAGTGTGGGGTTATAAGCCCTCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G00590.2 (Glycine max), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                           |||| ||   | |    |     |||    ||| ||||  | |  | |  |  | | ||   | || ||  | | ||||  | ||  | |  |||| |  ||| |||||||| ||||| |||||||||||||| |||||| |||| || || || |||||| |||||||  | || || || ||||||||||| || || ||
-------------------------gtattgatttgttatgtaatatgaatttggccttgaattgaatataataggaatttttttag--tgttgttggcatgttttgtt-atggtgtggtgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G00600.2 (Glycine max), 3'ss of exon 2
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                           |||| ||   | |    |     |||    ||| ||||  | |  | |  |  ||| |  | | || ||  | | ||||  | ||  | |  |||| |  ||| |||||||| ||||| |||||||||||||| |||||| |||| || || || |||||| |||||||  | || || || ||||||||||| || || ||
-------------------------gtattgatttgttatgtaatatgaatttggccttgaattgaatataataggaat-tgttt-tagtgttgttggcatgttttgtt-atggtgtggtgctttgtagGGTACATTGGTGAGTTCGAGTATGTTGATGACCACAGGGCTGGGAAAATCGTGGTTGAATTGAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 3'ss of exon 1
gtactaatcaattcatt---tgaatttcagattgtttcaattttcttttcttcttt---actt-------ttgcattgttttt---------ttttgttacct-----gtgtacatttttattcacgtattttactga--ttttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
|||| |||   || | |   |||  |||   |||||| | || ||| || || |||     ||       ||  |  || |           || ||  | ||      ||| || ||||      | |    ||  |  ||||  |||| | || ||||||||||| ||||||||| ||||| ||||||||||| || || |||||||| ||||| || |||||||| || ||||| || || ||||| ||||| ||
gtac-aattgttttactcaatgagcttcttcttgtttgatttctctcttttttttttaggtttaagggaattataccgtatcgaataaaacattctggaatctctcaaatgttcagttttgact-tgaaacacacaaactttttcctttggtttatagGTTACATTGCAGAGTTTGAATATGTGGATGATCACAGATCCGGGAAGATTGTGGTTGAGCTTAATGGAAGGCTTAACAACTGCGGTGTTATTAGTCCTCG

upper sequence: Vv13s0019g00530.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 1
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattt-tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                               | ||  | |   | || |||       |  | | ||| | || |   |     | ||   ||  |  || ||  |  |   | | ||    || | ||||||| |||||||||||||||  ||||||||| ||| |  |||| |||||||| || || || ||||||||| | ||||| || || || |||||||| ||
------------------------------ctctctctctctctctcatctacgaaaataaactatttatcttcgcgtctaagttgcagcattgatagcggatcgttttctctcttttggctcttttcagGTTATATTGGAGAGTTTGAGCTTGTTGATGACCACCGAGCTGGCAAGATTGTGGTAGAGCTCAATGGAAGATTGAACAAGTGCGGTGTCATCAGTCCTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189257|gb|CF608606.1|CF608606
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|37188644|gb|CF607993.1|CF607993
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110413213|gb|EC978992.1|EC978992
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110706416|gb|EE081925.1|EE081925
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|34320890|gb|CF373644.1|CF373644
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|71889263|gb|DT038318.1|DT038318
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|77583362|gb|DV220714.1|DV220714
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|71867515|gb|DT016570.1|DT016570
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110382367|gb|EC939287.1|EC939287
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|27584268|gb|CB006963.1|CB006963
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|32245695|gb|CD711514.1|CD711514
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110397390|gb|EC963125.1|EC963125
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110414287|gb|EC980114.1|EC980114
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110716930|gb|EE092340.1|EE092340
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110697335|gb|EE074231.1|EE074231
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110694545|gb|EE071755.1|EE071755
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|71867475|gb|DT016530.1|DT016530
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110422143|gb|EC988456.1|EC988456
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110396918|gb|EC962625.1|EC962625
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110407526|gb|EC973128.1|EC973128
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110700964|gb|EE078077.1|EE078077
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110702677|gb|EE078855.1|EE078855
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110688679|gb|EE067503.1|EE067503
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|351024589|gb|FQ433004.1|FQ433004
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCGTG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110707337|gb|EE083651.1|EE083651
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110377409|gb|EC942471.1|EC942471
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110715666|gb|EE093979.1|EE093979
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110391160|gb|EC956117.1|EC956117
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|71873421|gb|DT022476.1|DT022476
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110696211|gb|EE075108.1|EE075108
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|32246291|gb|CD712110.1|CD712110
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|34415895|gb|CF414649.1|CF414649
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|51050419|gb|CO818541.1|CO818541
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|71870073|gb|DT019128.1|DT019128
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|30138003|gb|CB923341.1|CB923341
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110374713|gb|EC939636.1|EC939636
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|27585355|gb|CB008050.1|CB008050
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|110724530|gb|EE100438.1|EE100438
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
EST: gi|87585766|gb|DY474350.1|DY474350
EST:     ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATG                         GTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG
genomic: ACCTTCCTCAAAAGTGATCGTCAAATTTCTCCTGGTTATGCAGAAGCATGgtactaatca ... tgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG
                               tactgat  putative branch site (score: 2)
                                     ttttattttgctct  CT-rich tract
                          tattttactgatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactaatcaattcatttgaatttcagattgtttcaattttcttttcttctttacttttgcattgtttttttttgttacctgtgtacatttttattcacgtattttactgattttattttgctctacagGTTACATTGGAGAGTTTGAGTATGTTGATGATCACAGGTCTGGAAAGATTGTTGTTGAACTGAATGGAAGACTAAACAAATGTGGGGTTATCAGTCCCCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA