1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgctgcaaaaatagagcatttggtttctagaatcctggaaagtgtctttttctgggttgtgatattgttactgaagccttgaatcaccattgatgtgcagGGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGAC
species | Vitis vinifera |
transcript | Vv13s0019g00020.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACCAAACCCATATCAGTACCCCATTGGAAAGAAACGTGTGCAGCCATTG GGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAGTCEST: gi|110711822|gb|EE088743.1|EE088743
genomic: CACCGAACCCATATCAGTACCCCATTGGAAAGAAACGTATGCAGCCATTGgtcagtaatt ... tgatgtgcagGGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCCATTGGAAAGAAACGTATGCAGCCATTG GGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATCEST: gi|110732363|gb|EE107582.1|EE107582
genomic: CACCGAACCCATATCAGTACCCCATTGGAAAGAAACGTATGCAGCCATTGgtcagtaatt ... tgatgtgcagGGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATC
EST: CACCAAACCCATATCAGTACCCCATTGGAAAGAAACGTATGCAGCCATTG GGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATC
genomic: CACCGAACCCATATCAGTACCCCATTGGAAAGAAACGTATGCAGCCATTGgtcagtaatt ... tgatgtgcagGGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATC
ctttttctgggttgtgatattgttactgaagccttgaatcaccattgatgtgcagGGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGAC
cattgat putative branch site (score: 4)
atattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctgcaaaaatagagcatttggtttctagaatcctggaaagtgtctttttctgggttgtgatattgttactgaagccttgaatcaccattgatgtgcagGGAATCCTTGTTTTTGCTTCTGTTATGGCAACTCTGGGACTGCAGATAATCTTGGAGTCAGTACGCACACTATCATCTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - aaaaata
- - - - - - - -gcatttg
- - - - - - - - - - - - - - - - tcctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcacca