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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttggagagtttgtttttccatttcttattcgctggttgtagtaactattatccttttccaagctatattatgaaaaggcatgttcttaactatttgattcttatgactgcaaacttattaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACA

Basic information

species Vitis vinifera
transcript Vv12s0142g00670.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G03760.1 (Glycine max), 3'ss of exon 3
gtgagtttggagagtttgtttttccatttcttattcgctggttgtagtaactattatccttttccaagctatattatgaaaaggcatgttcttaactatttgattcttatgactgcaaacttattaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACA
                                             | ||| | ||||  | |   ||  || ||   |     ||||||         |  |    |  |   | |    | |||   |    ||     |||||||| || ||||||||||||||||||||||| |||||||| || || || |||||| | ||  ||||||  |||||   |||| |||  || || ||||| 
---------------------------------------------aataagt-ttattatatctaaatgtacatatagtttgtgcatgtgtgcgcaagtgagcacatggtagttactttttaattggaaacttattggtgctgtagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCTCCTCTAATAACG

upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G41510.1 (Glycine max), 3'ss of exon 4
gtgagtttggagagtttgtttttccatttcttattcgctggttgtagtaactattatccttttccaagctatattatgaaaaggcatgttcttaactatttgattcttatgactgcaaactta-ttaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACA
                                             |  ||  |  |     |   ||    |   || ||   ||    || | |    ||||||  |||   |   ||||||  |   |    ||     |  ||||| || ||||||||||||||||||||||| ||||||||  | || |||||||  || ||   |||    |||||   |||| ||| ||| |||||||||
---------------------------------------------aagaatcaagagtaaataagaatgcttgagattaatgtgctgaatccttata--ttgattggtattggtaataacttaactgggaacttattggtgccatagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACA

upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G45030.1 (Glycine max), 3'ss of exon 3
gtgagtttggagagtttgtttttccatttcttattcgctggttgtagtaactattatccttttccaagctatattatgaaaaggcatgttcttaactatttgattcttatgactgcaaacttattaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACA
                                             | ||| | ||||  | |   ||  || ||   |     ||||||          | |    |  |   | |    | |||   |    ||     |||||||| || |||||||||||||| |||||||| |||||||| || || || |||||| | ||  ||||||  |||||   |||| ||| ||| || ||||||
---------------------------------------------aataagt-ttataatatctaaatgtacatatagtttgtgcatgtgtgcgcaagctagcacatggtagttactttttaattggaaacttattggtgctgtagGTTGGAGATTCTGATCAGAAATTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCACCTCTAATAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactatttgattcttatgactgcaaacttattaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACA
                              tattaat  putative branch site (score: 2)
                         aaacttattaatatt  TA-rich tract