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...ttttctttttttataaaaaataaaaataaaatgcttagaatatgctttcgttacttctttttttgatccatgaattatcaaaattaaacttttatggcagGGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAATTTGACGAACTTGGTGAGCTTGGATCTTTCAATGAACAATTTAAATGGT
species | Vitis vinifera |
transcript | Vv12s0121g00300.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCGGTCAACTGGTTCCACAGCTTGGTCAGCTTACAAATTTGCAATCTCT GGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAAEST: gi|349817988|gb|FQ407977.1|FQ407977
genomic: TCCGGTCAACTGGTTCCACAGCTTGGTCAGCTTACAAATTTGCAATATCTgtgagtcata ... tttatggcagGGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAA
EST: TCCGGTCAACTGGTTCCACAGCTTGGTCAGCTTACAAATTTGCAATCTCT GGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAA
genomic: TCCGGTCAACTGGTTCCACAGCTTGGTCAGCTTACAAATTTGCAATATCTgtgagtcata ... tttatggcagGGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAA
tttcgttacttctttttttgatccatgaattatcaaaattaaacttttatggcagGGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAATTTGACGAACTTGGTGAGCTTGGATCTTTCAATGAACAATTTAAATGGT
ttttgat putative branch site (score: 4)
cttttat putative PPT
atgaattatcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctttttttataaaaaataaaaataaaatgcttagaatatgctttcgttacttctttttttgatccatgaattatcaaaattaaacttttatggcagGGAACTTCATAATAATAATATAAGTGGAAAAATACCAAAGGAGCTTGGGAATTTGACGAACTTGGTGAGCTTGGATCTTTCAATGAACAATTTAAATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - aaaaaat
- - - - - - - - aaaataa
- - - - - - - - - - - - - - - -tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa