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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatgctatatatctgtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG

Basic information

species Vitis vinifera
transcript Vv12s0121g00080.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 3
gtaagcatgctatatatctgtgt-acattt-ctgcattatgtagatt-tattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
|||||  |    |  |||||| |  |   |  | ||   | || ||| | | || || | | | | |      | ||      ||   | | ||||   ||| ||  | |     |||||||||||||||||||||||||||||||||||| | |   | ||    | |
gtaagt-tatccttcatctgtcttgcgcctattccaagctataaattgtgtgctctttattgcaataatgacttataattccctc---ttactcat---tttacttttct-----tccagATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 3
gtaagcatgctatatatctgtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
|||||  |    |  |||||| |      ||     |   || | ||   |||   || ||  |   |  |   |  | ||   | |    |  |  ||   | |||    ||||||||||||||| ||||||||||||||||||||| |||   | ||    | |
gtaagt-tatccttcatctgtct-tgcgcctattcca---agctataaattgtgtgct-ctgtattgcaataaggacttataattccctctaactcattttactttt---cttccagATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACG

upper sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 3
gtaagcatgctatatatctgtgtacatttctgcattatgtagatttattctgttcactactagacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
                |  |    | ||  |   |  || |  | |   |     || | | | | |   | ||  | |||    | | || | |  |   | | || | |||| |||||||||||||||||  |||||||||||||| | | | | ||    |||
---------------gtaagccatccttgatctgtcttgcacctattcccaagctacaaatgg-cgtgcttgtattgcaataatataactcctctcatattttacttttctttc-agATTTCATGTGTATGACATTGATACAAAATATCATAGTGTTCCCACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacctctctttagcgtaatcggttcaatcatgtgtttgctcatttgtgtttccagATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAG
                                              tgtttcc  CT-rich tract