1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacatacactatccggtcaccttctttacttgtctctttccgcttcccttcgatgaatctaactttctaagctttggtataaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAACAGACGGCAACAGGATGTCAATAGCTTCATTCTACAACCCTGGAAACG
species | Vitis vinifera |
transcript | Vv12s0059g01380.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|30252772|gb|CB970323.1|CB970323
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGG-GANCCAACTTGAG GTGATCACAAATGGCAAATAEST: gi|32268302|gb|CD717461.1|CD717461
genomic: TCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGA-CCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACNAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|110727761|gb|EE104888.1|EE104888
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAACCCAAEST: gi|351054949|gb|FQ440288.1|FQ440288
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCCGCACAGGGTCGTAGCCCAAEST: gi|77583863|gb|DV220968.1|DV220968
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTEST: gi|30252855|gb|CB970406.1|CB970406
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGT
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|32270249|gb|CD719408.1|CD719408
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|45770833|gb|CN006685.1|CN006685
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TGACCAACTTGA- GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|351022691|gb|FQ428600.1|FQ428600
genomic: TGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|161710362|gb|FC058993.1|FC058993
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: CAACCCCGGTGACCAACTTGAG GTGATC-CAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|161710557|gb|FC059368.1|FC059368
genomic: CAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTTGCCCAAEST: gi|349832706|gb|FQ422064.1|FQ422064
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|32268560|gb|CD717719.1|CD717719
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|161718648|gb|FC068224.1|FC068224
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCA-TGCGCCACTCCAT-GTGGTCACCCTCG-TGACCA-CTTGAG GTGATC-CAA-TGGCAAEST: gi|30256251|gb|CB972094.1|CB972094
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGNTCGTAGCCGATEST: gi|110700838|gb|EE077845.1|EE077845
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAA-TGGCAAATACAAGAGTGTGCTGCACATGTTCGTATCCCAAEST: gi|110688626|gb|EE067394.1|EE067394
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGAACAACTTGAG GTGATCACAAATGGCAAATACNAGAGTGTGCTGCACAGGGTEST: gi|351055645|gb|FQ452110.1|FQ452110
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGT
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGGATCACAAATGGCAA-TACAAGAGTGTGCTGCACAGGGTCGTAGCCCAEST: gi|83275704|gb|DV939712.1|DV939712
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTG-ATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTTGCCCAAEST: gi|30256316|gb|CB972159.1|CB972159
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|110409687|gb|EC975356.1|EC975356
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAEST: gi|110361236|gb|EC924694.1|EC924694
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTTGCCCAAEST: gi|161719282|gb|FC064822.1|FC064822
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
EST: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAG GTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
genomic: TTCCTCCAATGCGCCACTCCATTGTGGTCAACCTCGGTGACCAACTTGAGgtacatacac ... taaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAA
tctttccgcttcccttcgatgaatctaactttctaagctttggtataaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAACAGACGGCAACAGGATGTCAATAGCTTCATTCTACAACCCTGGAAACG
atctaac putative branch site (score: 2)
tttggtataaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatacactatccggtcaccttctttacttgtctctttccgcttcccttcgatgaatctaactttctaagctttggtataaaaaatagGTGATCACAAATGGCAAATACAAGAGTGTGCTGCACAGGGTCGTAGCCCAAACAGACGGCAACAGGATGTCAATAGCTTCATTCTACAACCCTGGAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG