1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttaaaagatattactttttggctaacattgagagagcgagtggtggtaaaggacgtatttgacaatatttctataacaatgaatggtgatttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCTATGTATCCAGAGAGAAGCATCCCAAGCATCCACACCATTACAAAGCCG
species | Vitis vinifera |
transcript | Vv12s0059g01000.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAG GTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCEST: gi|349817993|gb|FQ407982.1|FQ407982
genomic: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAGgtatgtttat ... atttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
EST: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAG GTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCEST: gi|349822374|gb|FQ412638.1|FQ412638
genomic: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAGgtatgtttat ... atttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
EST: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAG GTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCEST: gi|349807920|gb|FQ402311.1|FQ402311
genomic: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAGgtatgtttat ... atttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
EST: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAG GTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCEST: gi|349817115|gb|FQ399862.1|FQ399862
genomic: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAGgtatgtttat ... atttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
EST: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAG GTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCEST: gi|349825728|gb|FQ421827.1|FQ421827
genomic: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAGgtatgtttat ... atttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
EST: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAG GTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
genomic: CAAATGTAGAAAGGAGAAACCATCCGACCATAATCAAGgtatgtttat ... atttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTC
tggtaaaggacgtatttgacaatatttctataacaatgaatggtgatttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCTATGTATCCAGAGAGAAGCATCCCAAGCATCCACACCATTACAAAGCCG
ctataac putative branch site (score: 3)
tttttgt putative PPT
tatttgacaatatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttaaaagatattactttttggctaacattgagagagcgagtggtggtaaaggacgtatttgacaatatttctataacaatgaatggtgatttttgtagGTTATATTGGAGAACAAGGAGAGCAGCTCTGATGGGTTGCCACATCTAGTCTATGTATCCAGAGAGAAGCATCCCAAGCATCCACACCATTACAAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - aaaagat
- - - - - - - - - - - - - - - - - - - - -gtggtgg
- - - - - - - - - - - - - - - - - - - - - - - - taaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaatgg