1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtggtgtgtgtagatccaaacctctaacaaaaccagaaagccagagagagttgatacattaagcaagacacatgatctaaatctgcaactgatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGATCTAAGGGGACTTGCTGGAGGATTGAATGGGATAAACGGCTCACCCAT
species | Vitis vinifera |
transcript | Vv12s0059g00270.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|349825727|gb|FQ421826.1|FQ421826
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAGACAGATTACCCATCATAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCEST: gi|351036975|gb|FQ459497.1|FQ459497
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGC
EST: GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351024357|gb|FQ423780.1|FQ423780
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATCACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351019797|gb|FQ439614.1|FQ439614
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATTAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|352790469|gb|FQ478109.1|FQ478109
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: CAAACAGATTACCCATCAAAGCCGCTCATCATTGTTTGGCTCCCTTACAG GAAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCGGGGGEST: gi|351035860|gb|FQ463705.1|FQ463705
genomic: CAAACAGATTACCCATCAAAGCGGCTCATCATTGTT-GGCTCCATTACAGgtactagttc ... gatgtttcagGAAA-CACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG AAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351046018|gb|FQ441401.1|FQ441401
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|349826737|gb|FQ418828.1|FQ418828
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351040767|gb|FQ438311.1|FQ438311
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCGAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAA-TGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351046996|gb|FQ454606.1|FQ454606
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GGAACACAAACACCTTGGCTGGAAAEST: gi|352790521|gb|FQ478161.1|FQ478161
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAA
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCTCAAAGGCTAACCTGGGGGEST: gi|351029565|gb|FQ427405.1|FQ427405
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351052019|gb|FQ455312.1|FQ455312
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|352798550|gb|FQ480575.1|FQ480575
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGAGGEST: gi|33401796|gb|CF207423.1|CF207423
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGTTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351035767|gb|FQ463612.1|FQ463612
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351045658|gb|FQ440843.1|FQ440843
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351054935|gb|FQ440274.1|FQ440274
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351048713|gb|FQ449383.1|FQ449383
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCEST: gi|351052941|gb|FQ453928.1|FQ453928
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCC
EST: GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351015379|gb|FQ447208.1|FQ447208
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351053123|gb|FQ455580.1|FQ455580
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351051565|gb|FQ450117.1|FQ450117
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATAACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCCAAGGCTAACCTGGGGGEST: gi|352786826|gb|FQ481201.1|FQ481201
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTACCCTGGGGGEST: gi|351032378|gb|FQ461631.1|FQ461631
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: ACAAACAGATTACCCATCAAAGCGGCTCATCACTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGGCCCCAAAGGEST: gi|351028317|gb|FQ427213.1|FQ427213
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGG
EST: GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|349828483|gb|FQ417225.1|FQ417225
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351055274|gb|FQ441872.1|FQ441872
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351055571|gb|FQ452036.1|FQ452036
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCCTGGGGEST: gi|351038936|gb|FQ457611.1|FQ457611
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACC-TGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351037337|gb|FQ460536.1|FQ460536
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351038373|gb|FQ461065.1|FQ461065
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|110726737|gb|EE102779.1|EE102779
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCCTGGGGEST: gi|110416548|gb|EC982538.1|EC982538
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACC-TGGGG
EST: GCAAACAGATTACCCATCAAAGGGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351038771|gb|FQ464637.1|FQ464637
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351038585|gb|FQ464451.1|FQ464451
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGEST: gi|351047090|gb|FQ454700.1|FQ454700
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: GCAAACAGATTACCCATCAAAACGGCTCATCATTGTTGGCTCCATTACAG GAAACAAAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCEST: gi|352790520|gb|FQ478160.1|FQ478160
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGC
EST: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG GAAACACAAACACCTTGGCTGGAAATGTGCC
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCC
gagagttgatacattaagcaagacacatgatctaaatctgcaactgatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGATCTAAGGGGACTTGCTGGAGGATTGAATGGGATAAACGGCTCACCCAT
aactgat putative branch site (score: 3)
atacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgtgtgtagatccaaacctctaacaaaaccagaaagccagagagagttgatacattaagcaagacacatgatctaaatctgcaactgatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGGATCTAAGGGGACTTGCTGGAGGATTGAATGGGATAAACGGCTCACCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- -gtgtgtg
- - - - - - - -ccaaacc
- - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - aaagcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcaac