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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcaacctcctttttttgtttgtttgtttatccccattggtttattctcttttgcttcaaaatttatgggttttgatattttcataggcatttgcccccatccaatttgggactcaaattaattataaaagcaggagttcttaaatgttgttttgtgtcaacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCTTTGGAAATGTTCTCAGTGCAAATTTAGGACAGGCTCCTGCTAGACAAGC

Basic information

species Vitis vinifera
transcript Vv12s0057g01200.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 3'ss of exon 3
gtcagtcaacctcctttttttgtttgtttgtttatccccattggtttattctcttttgcttcaaaatttatgggttttgatattttcataggcatttgcccccatccaatttgggactcaaattaattataaaagcaggagttcttaaatgttgttt-tgtgtcaacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCTTTGGAAATGTTCTCAGTGCAAATTTAGGACAGGCTCCTGCTAGACAAGC
                                                                                   |   |   | || | | |  || |  | || |     ||||  |  |  || |   |  |    ||  |  |   ||||   |     ||| ||||| || ||||||||||||||| || | ||||| ||||| || |||||||| |||||  | ||||| ||||| || || |||||||| ||||||||
----------------------------------------------------------------------------------gtgataccagtatcttctcatatgctgtatgtgt----aattgttcttttaacccaaatataactaacatcatcagtgtggtgatc---agCTGCTCTGAAGAGGGCAAATGTTGATCCAGCCCTTGTGCAAGAGGTCTTCTTTGGTAATGTGTTGAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G00760.1 (Glycine max), 3'ss of exon 3
gtcagtcaacctcctttttttgtttgtttgtttatccccattggtttattctcttttgcttcaaaatttatgggttttgatattttcataggcatttgcccccatccaatttgggactcaaattaattataaaagcaggagttcttaaatgttgttttgtgtcaacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCTTTGGAAATGTTCTCAGTGCAAATTTAGGACAGGCTCCTGCTAGACAAGC
                                                                                        ||   ||     || ||   | |    | |  | |  |||  |||   |   ||  ||| || || ||    ||  |  || ||| |||||||||||||| ||||||||| |||| |||||  ||||||| || ||||| |||||||| ||||| ||||| || || |||||||| ||||||||
---------------------------------------------------------------------------------------gtaactatggaagcctatgtcagtgctaattacattccatttgaaacttatttgtgtttacatatttttc---gttcatctgcagCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTTGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

upper sequence: Vv12s0057g01200.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G47860.2 (Glycine max), 3'ss of exon 3
gtcagtcaacctcctttttttgtttgtttgtttatccccattggtttattctcttttgcttcaaaatttatgggttttgatattttcataggcatttgcccccatcca--atttgggactcaaattaattataaaagcaggagttcttaaatgttgttttgtgtcaacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCTTTGGAAATGTTCTCAGTGCAAATTTAGGACAGGCTCCTGCTAGACAAGC
                                                                         ||    || | ||   |  | | || |       |  |  | | | |  ||||| || |              ||| || || ||    ||  |  || ||| |||||||||||||| ||||||||| |||| |||||  ||||||| || || || |||||||| ||||| ||||| || || |||||||| ||||||||
-------------------------------------------------------------------------gtaactatgtctttggaaacctatgtcagtgcttattacattgcatttgaattatttgtg------------tttacatatttttc---gttcatctgcagCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTCGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110398909|gb|EC965389.1|EC965389
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110699364|gb|EE076300.1|EE076300
EST:     ATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACCAGAAGTTTTCT
genomic: ATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110403296|gb|EC964774.1|EC964774
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|71859096|gb|DT008151.1|DT008151
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110701385|gb|EE078893.1|EE078893
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|161716985|gb|FC066530.1|FC066530
EST:     TACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|161717757|gb|FC064725.1|FC064725
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|71866622|gb|DT015677.1|DT015677
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|161712803|gb|FC062326.1|FC062326
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110398035|gb|EC964108.1|EC964108
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|32269649|gb|CD718808.1|CD718808
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|71875811|gb|DT024866.1|DT024866
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110723077|gb|EE099979.1|EE099979
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110686757|gb|EE064757.1|EE064757
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|161720962|gb|FC070684.1|FC070684
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110698167|gb|EE075418.1|EE075418
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110685325|gb|EE063616.1|EE063616
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110723249|gb|EE100343.1|EE100343
EST:     CATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: CATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|71855093|gb|DT004148.1|DT004148
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|34543095|gb|CF511327.1|CF511327
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|77587675|gb|DV223012.1|DV223012
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|30299187|gb|CB975981.1|CB975981
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110702702|gb|EE078902.1|EE078902
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|110364569|gb|EC927918.1|EC927918
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
EST: gi|77586011|gb|DV222101.1|DV222101
EST:     TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAG                         CCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT
genomic: TACACTTTCATCTTTATCAGCTACCAAGCTTGGATCTATAGCCATTGAAGgtcagtcaac ... caacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaattaattataaaagcaggagttcttaaatgttgttttgtgtcaacttgtagCCGCTCTTAAAAGGGCAAATGTTGATGCATCACTTGTACAAGAAGTTTTCTTTGGAAATGTTCTCAGTGCAAATTTAGGACAGGCTCCTGCTAGACAAGC
   aattaat  putative branch site (score: 3)
     ttaattataaaagca  TA-rich tract