1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggaaggccttacacataaatatactgtaaggctttatacttaaacatgctgtctttggtctgatggagtggtaaattttttttctgtttgttggatacagGCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGACAAAGTAAGATTCCGGA
species | Vitis vinifera |
transcript | Vv12s0055g01100.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAG GCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGCEST: gi|110398042|gb|EC964119.1|EC964119
genomic: CTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAGgtaatttctt ... ttggatacagGCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGC
EST: CTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAG GCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGCEST: gi|110372109|gb|EC936254.1|EC936254
genomic: CTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAGgtaatttctt ... ttggatacagGCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGC
EST: CTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAG GCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGC
genomic: CTGGGCATTTTCCCGAGAGGCCAATTATGCCTGGTGTTCTCATGGTTGAGgtaatttctt ... ttggatacagGCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGC
atgctgtctttggtctgatggagtggtaaattttttttctgtttgttggatacagGCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGACAAAGTAAGATTCCGGA
gtctgat putative branch site (score: 4)
ttttttttctgtttgt putative PPT
taaattttttttctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaggccttacacataaatatactgtaaggctttatacttaaacatgctgtctttggtctgatggagtggtaaattttttttctgtttgttggatacagGCAATGGCACAGGTTGGTGGCTTGGTAATGCTACAACCTGAAGTGGGAGGCTCTCGTGAAAATTTCTTCTTTGCTGGAATTGACAAAGTAAGATTCCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
ggaaggc
- - - - - - acataaa
- - - - - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgg