1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctttcttaagtccattactacggtttagctgattcttttgatccatgtaactttgataaattcaagtaattgtgtctcattattgtttaattctgtcagGTGCCAAGTCCTTCAGATAAACCAAAATCAAAGATTGGACTACAGCCTTTACACCTTGTTAATCACTCCCAACGTGGGGGCCCTGCAAGATCTGATGTTA
species | Vitis vinifera |
transcript | Vv12s0055g00330.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCATG GTGCCGAGTCCTTCAGATAAACCAAAATCAAAGATTGGAGTACAGCCTTTEST: gi|37185095|gb|CF604448.1|CF604448
genomic: ACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCC-TGgtaagagcct ... attctgtcagGTGCCAAGTCCTTCAGATAAACCAAAATCAAAGATTGGACTACAGCCTTT
EST: AACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG GTGCCAAGTCCTTCAGATAAACCAAAATCAAAGATTGGACTACAGCCTTTA
genomic: AACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTGgtaagagcct ... attctgtcagGTGCCAAGTCCTTCAGATAAACCAAAATCAAAGATTGGACTACAGCCTTTA
atgtaactttgataaattcaagtaattgtgtctcattattgtttaattctgtcagGTGCCAAGTCCTTCAGATAAACCAAAATCAAAGATTGGACTACAGCCTTTACACCTTGTTAATCACTCCCAACGTGGGGGCCCTGCAAGATCTGATGTTA
ttctgtc CT-rich tract
ataaattcaagtaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttcttaagtccattactacggtttagctgattcttttgatccatgtaactttgataaattcaagtaattgtgtctcattattgtttaattctgtcagGTGCCAAGTCCTTCAGATAAACCAAAATCAAAGATTGGACTACAGCCTTTACACCTTGTTAATCACTCCCAACGTGGGGGCCCTGCAAGATCTGATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - ccattac
- - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - -ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaagta