1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtcaaagtttttattgtttctgaacctgctacgtaagctggcttactcctaataatttgcctcctgagctctctggtctaatatggttctgcttgcagGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAGCTGAGAGGTTTCTGAGTAGTATCACAAACTCAATTGAGATAGTTATGAG
species | Vitis vinifera |
transcript | Vv12s0035g01960.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTGCTACACGCTCATGGAAAGCTTGTATCAATCTCTGAAGCTGAAG GTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAGEST: gi|110688799|gb|EE067767.1|EE067767
genomic: GCAGCTGCTACACGCTCATGGAAAGCTTGTATCAATCTCTGAAGCTGAAGgtaagcccat ... ctgcttgcagGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAG
EST: GCAGCTGCTACACGCTCATGGAAAGCTTGTATCAATCTCTGAAGCTGAAG GTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAG
genomic: GCAGCTGCTACACGCTCATGGAAAGCTTGTATCAATCTCTGAAGCTGAAGgtaagcccat ... ctgcttgcagGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAG
tactcctaataatttgcctcctgagctctctggtctaatatggttctgcttgcagGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAGCTGAGAGGTTTCTGAGTAGTATCACAAACTCAATTGAGATAGTTATGAG
ttctgctt CT-rich tract
taataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtcaaagtttttattgtttctgaacctgctacgtaagctggcttactcctaataatttgcctcctgagctctctggtctaatatggttctgcttgcagGTGGTCTGGTTGCTTATGTTGCATTTCAGGATGAAGATATTAAATGTAGAGCTGAGAGGTTTCTGAGTAGTATCACAAACTCAATTGAGATAGTTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - cctgcta
- - - - - - - - - - - - - - - - - - - - tggctta
- - - - - - - - - - - - - - - - - - - - - - - -ctcctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctctc