Sequence
atgc intronic sequence ATGC exonic sequencegtttgcctgcagtctagatgctgttactttggttttcattatcggaattttatatggcgatcaactctttggtggtttgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0035g01560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA01G43150.1 (Glycine max), 3'ss of exon 6
--------------gtttgcctgcagtctagatgctgttactttggttttcattatcggaattttatatggcgatcaactctttggtggtttgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT
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agagtatacatcaagatcaaacagaatctgtacctcactacctcatcattttgtggaacatgtttaaacaat-attgacgaaaatgtggtctgctattcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT
upper sequence: Vv12s0035g01560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA11G02340.1 (Glycine max), 3'ss of exon 6
--------------gtttgcctgcagtctagatgctgttactttggttttcattatcggaattttatatggcgatcaactctttggtggtttgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT
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agagtatacatcaagatcaaacagaatctgtacctcactacctcataattttgtggaacatgtctaaaaaat-attgatgaaaatgtggtctgcctttcagGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGT
upper sequence: Vv12s0035g01560.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G11260.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgcctgcagtctagatgctgttactttggttttcattatcggaattttatatggcgatcaactctttggtggt-----ttgaatttc--agGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT
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--------gttccacaaacgctaacttctcatccttaacactagaggctttgctgtactttgttctttctgcttatcacttttgaatttcgcagGAGAAGGATGAGAAGCTTGATGGAGATGCAGCTATGAACAAATTTTTCAGCGACATATACTCGAGTGCAGATGAAGACATGAGGCGGGCAATGAACAAAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcattatcggaattttatatggcgatcaactctttggtggtttgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT
aattttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgcctgcagtctagatgctgttactttggttttcattatcggaattttatatggcgatcaactctttggtggtttgaatttcagGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAGATTTTTCCGGGACATTTACCCAGATGCAGATGAAGACACAAGAATGGCCATGCAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA