Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatccttctattcctgttacattatgttggggttttgatttggtgaaggaactagtagtactaaaagtcgtcgataatggattgcagGGCCGTGTACCGTTTGTTTCCCAAGAAGGTCTAGAGCAGCTTCACCGGTTTCTGTTTGTTCTTGGCATTACCCATGTCGTGTATAGTTGTATGGCGGTTG

Basic information

species Vitis vinifera
transcript Vv12s0035g00260.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G20120.1 (Glycine max), 3'ss of exon 3
--------------------------------------------------------------------------------------------------gtaaatccttctattcctgttacattatgttggggttttgatttggtgaaggaacta-gtagtact----aaaagtcgtcgataatggattgcagGGCCGTGTACCGTTTGTTTCCCAAGAAGGTCTAGAGCAGCTTCACCGGTTTCTGTTTGTTCTTGGCATTACCCATGTCGTGTATAGTTGTATGGCGGTTG
                                                                                                  |   ||  |  | |       | | |  | |    | |   |||  |  |   ||||   ||| ||      |     |  ||||  || ||||||||| || ||| ||||||||  | || ||||| |||||||| || |||||  | ||||||||||| || || |||||  ||||||||||| |||| ||||
gtaacagtctgctgtaaagtgatttctgccttcacaagaaattcatttacaaaaaaaaattagttgaagattgaaaacatacaggaaaacaaacggcagggcattatcttctgttgaacaaactgagatcaaatatctgtttctttgaaatactacaaagtgctcttctgataattttaataaatgaatgcagGGCCATGAACCATTTGTTTCATATGAGGGTCTTGAGCAGCTGCATCGGTTCTTATTTGTTCTTGGGATCACTCATGTTCTGTATAGTTGTCTGGCTGTTG

upper sequence: Vv12s0035g00260.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G29080.1 (Glycine max), 3'ss of exon 2
----------gtaaatccttctattcctgttacattatgttggggttttgatt-tggtgaaggaactagtagtactaaaagtcgtcgataatggattgcagGGCCGTGTACCGTTTGTTTCCCAAGAAGGTCTAGAGCAGCTTCACCGGTTTCTGTTTGTTCTTGGCATTACCCATGTCGTGTATAGTTGTATGGCGGTTG
          |   ||  |  | |       | | |  | |    | ||  ||    |     || |     | || ||| |  |  ||||  || ||||||||| || ||| ||||||||  | || ||||| |||||||| ||||||||  | |||||||| || || || |||||  ||||||||||| |||| ||||
acaaacttcagggcattatcttctgttgaacaaactgagatcaaatattctttgcaatactacaaatcacccttctgaaaatt-ttaataaatgaatgcagGGCCATGAACCATTTGTTTCGTATGAGGGTCTTGAGCAGCTGCACCGGTTCTTATTTGTTCTCGGGATCACTCATGTTCTGTATAGTTGTCTGGCTGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgatttggtgaaggaactagtagtactaaaagtcgtcgataatggattgcagGGCCGTGTACCGTTTGTTTCCCAAGAAGGTCTAGAGCAGCTTCACCGGTTTCTGTTTGTTCTTGGCATTACCCATGTCGTGTATAGTTGTATGGCGGTTG
                          tactaaa  putative branch site (score: 1)
                          tactaaaa  TA-rich tract