1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatttttatggttttagttggaacagcatctaatgtttttgcattgctaatcaattagatcataccagttaccatttttctcccatttttttggacttttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGGTACAGCATCATGTCATTGGGCGTCTGCATTGCAGTTTCAGCTTTGCAG
species | Vitis vinifera |
transcript | Vv12s0034g01440.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGEST: gi|351016734|gb|FQ424161.1|FQ424161
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCG
EST: GAAGGAGCAGTGGAGGCCATCCATGAAAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAAATGCA-GAGTGGCATEST: gi|349826899|gb|FQ418990.1|FQ418990
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAA-TGCAAGAGTGGCAT
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGEST: gi|351028478|gb|FQ444759.1|FQ444759
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATG
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGEST: gi|110390944|gb|EC955893.1|EC955893
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATG
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGEST: gi|351034240|gb|FQ448037.1|FQ448037
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATG
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGEST: gi|351014680|gb|FQ437880.1|FQ437880
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATG
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGEST: gi|351029626|gb|FQ427466.1|FQ427466
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATG
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGEST: gi|351017782|gb|FQ436135.1|FQ436135
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATG
EST: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCG AGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGG
genomic: GAAGGAGCAGTGGAGGCCATCCATGAGAATCTACTCTATCTCAAGAGCCGgtaattttta ... ttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGG
attagatcataccagttaccatttttctcccatttttttggacttttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGGTACAGCATCATGTCATTGGGCGTCTGCATTGCAGTTTCAGCTTTGCAG
cttttactc CT-rich tract
attttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttatggttttagttggaacagcatctaatgtttttgcattgctaatcaattagatcataccagttaccatttttctcccatttttttggacttttactcacagAGAAGCAGAAATGAGGATGGTGAGCGAAAAAACAAATGCAAGAGTGGCATGGTACAGCATCATGTCATTGGGCGTCTGCATTGCAGTTTCAGCTTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT