Sequence
atgc intronic sequence ATGC exonic sequence...gatttatcataatcttttgtgagacctgtaggacttactaaattatctgattggccagttgggtttttttttttttttgggataaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G19800.2 (Glycine max), 3'ss of exon 4
------gatttatcataatcttttgtgagacctg-taggacttactaaattatctg-attggccagttgggtttttttttttttttgggataaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT--------
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ttgtccatttaattatcaaatactgtaatactgaataaactttattattttattttcaaaaaataaatgcaatgctcattgcttttggac--------atgtctatagGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTAC------ACTAATGACCT---TTCCAGCAATTCAGAGAAGGCTTCTTTACAG
upper sequence: Vv12s0034g01220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G05220.1 (Glycine max), 3'ss of exon 1
------gatttatcataatcttttgtgagacctg-taggacttactaaattatctg-attggccagttgggtttttttttttttttgggataaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT--------
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ttgtccatttaattatcaaatactgtaatactgaataaacattattattatatttccataaaagaaatgcagtgctcattgcttttggac--------atgtctatagGACCCTGCATTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTAC------ACTAATGACCT---TTCCAGCAATGCAGAGAAGGCTTCTTTACAG
upper sequence: Vv12s0034g01220.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT1G71240.1 (Arabidopsis thaliana), 3'ss of exon 3
gatttatcataatcttttgtgagacctgtaggacttactaaattatctgattggccagttgggtttttttttttttttgggat---aaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT
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---gtatctggaaact----gggatgctttacacttattgtttcag--aaatggagagtattgtttattggtttctgaagcattgaaaattatctcttcatagGAACCTGCATTCCAGAGGCTTATATTCATCACAATGCTCGCGTGGGCGAATCCATATTGTAAAGAAAGAAATGCACGCAATGATGCCTCAGGAAAACCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctgattggccagttgggtttttttttttttttgggataaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT
atctgat putative branch site (score: 4)
tttttttttttttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatttatcataatcttttgtgagacctgtaggacttactaaattatctgattggccagttgggtttttttttttttttgggataaatttggtgcttacagGAACCTGCATTCCAGAGACTGATTTTCATTACAATGCTCGCATGGGAGAATCCTTACTATGAAGCAAATGATTCAAATGCTATTGGTTTAGAGAAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - -acctgta
- - - - - - - - - - - - - - - - - - - - - - - -tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggataaa