Sequence
atgc intronic sequence ATGC exonic sequence...ggggaacatgacttggtaatgcccttgttgtgttgaacaattacttcttgattggcttatgctgataggtgctgctaattgatatcctctttcatcacagTTGCAGTAACCCAGATTCTTTGGAGGCCAAGAGGTTTACTGGTGGATCAATTTGACTCCAAAGAGGATCTCATCAATGCAGTGTTCACTTCTTCCTTCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G097896_T01 (Zea mays), 3'ss of exon 3
--------------------ggggaacatgacttggtaatgcccttgttgtgttgaacaattacttcttgattggc--ttatgctgataggtgctgctaattgatatcctctttcatcacagTTGCAGTAACCCAGATTCTTTGGAGGCCAAGAGGTTTACTGGTGGATCAATTTGACTCCAAAGAGGATCTCATCAATGCAGTGTTCACTTCTTCCTTCAT
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gtaagattaatattttacaagaacagcatgtccatatcaaatatgtgcatcttttggtattttgttcttgacaagtaacttggttttgccattttgagaatacttatattcttctcatacagTTGCTATTACTCAGCTATCCTGGAGGCCTAGGGCCTTGCTGGTGGACCAATTTGACTCCAAAGAAGATGTCATTAATGCAGTAATTACATCCTCCTTTAT
upper sequence: Vv12s0034g01170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G19720.1 (Glycine max), 3'ss of exon 3
----ggggaacatgacttggtaatgcccttgttgtgttgaacaattacttcttgattggcttatgctgataggtgctgctaattgatatcctctttcatcacagTTGCAGTAACCCAGATTCTTTGGAGGCCAAGAGGTTTACTGGTGGATCAATTTGACTCCAAAGAGGATCTCATCAATGCAGTGTTCACTTCTTCCTTCAT
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gtccaaaaagtaaagttgggaaatgacctaagagttcttatta-ttagtagtgaaatttttttcgtcatgttgtacctcaactatgtactgtct---gtcgcagTTGCTGTGACACAGCTTCTTTGGAGACCCAGGGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTAT
upper sequence: Vv12s0034g01170.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G05300.2 (Glycine max), 3'ss of exon 3
-----ggggaacatgacttggtaatgcccttgttgtgttgaacaattacttcttgattggcttatgctgataggtgctgctaattgatatcctctttcatcacagTTGCAGTAACCCAGATTCTTTGGAGGCCAAGAGGTTTACTGGTGGATCAATTTGACTCCAAAGAGGATCTCATCAATGCAGTGTTCACTTCTTCCTTCAT
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gggccaaaaagtaaagttggaaaatgacctaagagt-tccctttattagtagtgaaaattttcagtcttgctg-tgcctcaactatgtaccttct---gtcgcagTTGCTGTGACACAGCTTCTTTGGAGACCCCGAGGTTTGTTGGTAGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACCTCTTCCTTTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttgattggcttatgctgataggtgctgctaattgatatcctctttcatcacagTTGCAGTAACCCAGATTCTTTGGAGGCCAAGAGGTTTACTGGTGGATCAATTTGACTCCAAAGAGGATCTCATCAATGCAGTGTTCACTTCTTCCTTCAT
tatcctctttcatc CT-rich tract
taattgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggggaacatgacttggtaatgcccttgttgtgttgaacaattacttcttgattggcttatgctgataggtgctgctaattgatatcctctttcatcacagTTGCAGTAACCCAGATTCTTTGGAGGCCAAGAGGTTTACTGGTGGATCAATTTGACTCCAAAGAGGATCTCATCAATGCAGTGTTCACTTCTTCCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - -acatgac
- - - - - - - - -aatgccc
- - - - - - - - - - - - -tgttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctaa