Sequence
atgc intronic sequence ATGC exonic sequence...tcttcattaactgttcatattatattataagacatgattttatttgtcactttactcttgaagactgttcattgttgttgtaataagctctttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA15G05370.1 (Glycine max), 3'ss of exon 3
tcttcattaactgttcatattatattataagacatgattttatt--tgtcactttactcttgaagactgttcattgttgttg-taataagctctttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCA
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--gttacgaaatgttgttttctcatggaaatttactgtcatattgctttcatctttcaatttgttatc-tgggttgcaatcactgctaatttttattttacagGTATACTTCAAGGCTACAGATCCTTTCAATGAGCGCTGGCAAAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTA
upper sequence: Vv12s0034g01090.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G19670.1 (Glycine max), 3'ss of exon 3
tcttcattaactgttcatattatattataagacatgattttatt--tgtcactttactcttgaagactgttcattgttgttg-taataagctctttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCA
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--gtcatgaaatgttgttttctcatggaaatttaccgtcatattgcttttgcttttcaatttgttatc-tgtgttgtaatcactgctaatttttcttttacagGTATACTTCAAAGCTACAGATCCTTTCAATGAGCGCTGGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCATTACTCTGTGTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30297840|gb|CB974634.1|CB974634EST: ATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGAGATGAG GTCTACTTTAAGGCAACGGATCCATTCAACGAGCGGTGGCAGAGTGCTTGG
genomic: ATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgttctc ... tttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcactttactcttgaagactgttcattgttgttgtaataagctctttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCA
ctctttcctac CT-rich tract
ttgtaataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttcattaactgttcatattatattataagacatgattttatttgtcactttactcttgaagactgttcattgttgttgtaataagctctttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGGATCATTACTGCTTTTTGGGACATTCTTGCTTTTGGATTGCTCTGTGTCA
- - cattaac
- - - - - - - - - - - - - - - - catgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataagc