1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gttcaagtctgtttcccactcctagcaggaaaagtctagtgcatatttgcatttactaatgaactaccatatggttctaatgtgaaaattttctgtgcagTGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATACAATAAG
species | Vitis vinifera |
transcript | Vv12s0028g03370.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGG TGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATACAATAAEST: gi|110709548|gb|EE085106.1|EE085106
genomic: TTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGGgttagtaata ... ttctgtgcagTGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATACAATAA
EST: TTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGG TGCCTTCTACAAGAACATGGGTGAAGGTTGGAAAGTGTGTCACATACAATAEST: gi|110710091|gb|EE086125.1|EE086125
genomic: TTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGGgttagtaata ... ttctgtgcagTGCCTTCTACAAGAACATGG-TGAAGGTTGGAAAGTGTGTCACATACAATA
EST: TTTGACATTTCTAGAACCTTCATTTTCTCAAATTTTGATTATGTTGGAGG TGCCTTCTACA-GAACATGGTGAAAGTTGGAAAGTGTGTCACATACAATAA
genomic: TTTGACATTTCTAGAACCTTCATTTTCTCAGATTTTGATTATGTTGGAGGgttagtaata ... ttctgtgcagTGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATACAATAA
tttgcatttactaatgaactaccatatggttctaatgtgaaaattttctgtgcagTGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATACAATAAG
ttttctgt CT-rich tract
taatgtgaaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaagtctgtttcccactcctagcaggaaaagtctagtgcatatttgcatttactaatgaactaccatatggttctaatgtgaaaattttctgtgcagTGCCTTCTACAAGAACATGGTGAAGGTTGGAAAGTGTGTCACATACAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- tcaagtc
- - - - - - - cccactc
- - - - - - - - - - - - - -ggaaaag
- - - - - - - - - - - - - - - - - - - gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - -catttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatt