1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagaaactgaattcatcacctcatgttatgattcctatcaatgtagcagtattttctgagtgacgtcaagggttgataaacagGGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTTGCGAGTGGCCAGAGCTATACTTCCAGCTACAAATCTTGCCATTTCAAAG
species | Vitis vinifera |
transcript | Vv12s0028g03190.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAG GGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTTEST: gi|110382935|gb|EC947267.1|EC947267
genomic: GGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAGgtagaaactg ... tgataaacagGGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTT
EST: GGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAG GGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTTEST: gi|71859249|gb|DT008304.1|DT008304
genomic: GGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAGgtagaaactg ... tgataaacagGGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTT
EST: GGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAG GGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTT
genomic: GGACTTTTATTTCTCGGTTTGTCGTTCTTCTCAAACTCACTGTACCAAAGgtagaaactg ... tgataaacagGGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTT
tgattcctatcaatgtagcagtattttctgagtgacgtcaagggttgataaacagGGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTTGCGAGTGGCCAGAGCTATACTTCCAGCTACAAATCTTGCCATTTCAAAG
ggttgat putative branch site (score: 5)
agtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaactgaattcatcacctcatgttatgattcctatcaatgtagcagtattttctgagtgacgtcaagggttgataaacagGGATAATGTTGAAAAGAGACGCGAGTTTAAGCTCAAGGAAGACGACATTTTGCGAGTGGCCAGAGCTATACTTCCAGCTACAAATCTTGCCATTTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT