1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...gacagcgttcatcattgtttacatcgagctctctggttggacatttttgcattgccatttatatccaccatgtgatttactttctcctgtgtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAAGGAGAACTG
species | Vitis vinifera |
transcript | Vv12s0028g03130.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAG AAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAAEST: gi|110730294|gb|EE107210.1|EE107210
genomic: ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgaccta ... gtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA
EST: ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAG AAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA
genomic: ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgaccta ... gtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA
tttgcattgccatttatatccaccatgtgatttactttctcctgtgtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAAGGAGAACTG
atttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacagcgttcatcattgtttacatcgagctctctggttggacatttttgcattgccatttatatccaccatgtgatttactttctcctgtgtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAAGGAGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - agctctc
- - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccacca