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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctctctctctctctctctctctctctctctctttctccttctttctctctcactcaataaattatagtctaaattggcattttccctttggcatagGTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCAGCGGCG

Basic information

species Vitis vinifera
transcript Vv12s0028g03100.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30251126|gb|CB968859.1|CB968859
EST:     CACCTCCTTCACCTTCACCGGACCCTTATTGGCATCCTCACCACCAACGC                         GTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCA
genomic: CACCTCCTTCACCTTCACCGGACCCTTATTGGCATCCTCACCACCAACGCgtaagctctc ... tttggcatagGTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCA
EST: gi|30295668|gb|CB972462.1|CB972462
EST:     CACCTCCTTCACCTTCACCGGACCCTTATTGGCATCCTCACCACCAACGC                         GTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCA
genomic: CACCTCCTTCACCTTCACCGGACCCTTATTGGCATCCTCACCACCAACGCgtaagctctc ... tttggcatagGTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctctctcactcaataaattatagtctaaattggcattttccctttggcatagGTTCCAAATGGACTAACCCAAGGGACACCTTGCTTTCCACAACCTCTGGCAGCGGCG
                         gtctaaa  putative branch site (score: 3)
                                    cattttcccttt  putative PPT
            tcaataaattatagtc  TA-rich tract