Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctttctcccttacccaatatgtatcctctccactgcactcgtatagaactgcataatgaaatggagcttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA

Basic information

species Vitis vinifera
transcript Vv12s0028g02020.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA12G15420.1 (Glycine max), 3'ss of exon 3
-----------------gtaaatctttctc-----ccttacccaatat--gtatcctctccactgcactcgtat--agaactgcataatgaaatggagc-ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA
                 ||| || ||| |        |||  || |||  || || | |       ||| ||||  ||   ||   |||||  || |   ||  |||||| ||||||||||||| |||||| | || || ||||| || || || || || |||||||| || ||||||||||  |||||||| |||||||||||||  |
gtattgctttcttctctgtagattttttttgaatatattattcattattggtctcttttttttcctactagtatttaggcatgatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTGGGAAGTTGGAAAGGGCTCTTGGAGCAA

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
gtaaatctttctc-ccttacccaatatgtatcctc-tccactgcactcgtat--agaactgcataatgaaatggagc-ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA
     | || |||  | ||    ||  || || |  |   |   | | ||||  ||   |    |||||  || |   ||  |||||| ||||||||||||| |||||| | || || |||||||| || || || || |||||||| || |||||||||  ||||||||| || ||||||||||  |
----gtattgctcgtcgtatattatcggtctctttattttccttattagtatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA06G42900.1 (Glycine max), 3'ss of exon 3
-----------------gtaaatctttctcccttacccaatatgtatcctc-tccactgcactcgta--tagaactgcataatgaaatggagc-ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA
                 ||| |  | | |    ||    ||   | || |  |       | | | |  |||   |    |||||  || |   ||  |||||| ||||||||||||| |||||| | || || ||||| || || || || || |||||||| || |||||||||| ||||||||| || || |||||||  |
gtattactctcccttcagtagaattatttttaatatatcatcgatctctttatttttcttattagcaattaggcattatcaatgacgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGAAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAAAGAGCCCTTGGAGCTA

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G42680.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaaatctttctcccttacccaatatgtatcctctccactgcactcgtatagaact-gcataatgaaatggagcttgttt--------gcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA
||| ||  | || |  |   | ||||||  |||    | | | ||  | |  |||| |  | |||| |  | | ||||||        | |||| ||||||||||| || ||| | |||||||||||||| ||||| |||||||| || || || || ||  ||   ||| ||||||| || |||||||  |
gtatattatccttctct---ctatatgt-cccttattattaccctattttgtaactcggttcatgacaaagtgtttgtttctttttgtgtagATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGCAAAGCTATACCCAACCAGCAAATCCTTTCTAAGCTGGAGAGAGCGCTTGGAGCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376772|gb|EC941847.1|EC941847
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110385439|gb|EC949964.1|EC949964
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26261774|gb|CA812837.1|CA812837
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAATTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110709567|gb|EE085139.1|EE085139
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|22011264|gb|BQ796298.1|BQ796298
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|37189291|gb|CF608640.1|CF608640
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|30321073|gb|CD004335.1|CD004335
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|71883230|gb|DT032285.1|DT032285
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110724742|gb|EE100846.1|EE100846
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110409136|gb|EC974792.1|EC974792
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|30296972|gb|CB973766.1|CB973766
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|30297030|gb|CB973824.1|CB973824
EST:     TCATGCAAGCTCGAATGGCCAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAACCCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|32269761|gb|CD718920.1|CD718920
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352790908|gb|FQ477356.1|FQ477356
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352790919|gb|FQ477367.1|FQ477367
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110392818|gb|EC957277.1|EC957277
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110726726|gb|EE102761.1|EE102761
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAGGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26262403|gb|CA813466.1|CA813466
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAANAC-TCAAATAATTCAAGAGTATGAATCTGGTAAAGC
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAA-ACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGC
EST: gi|32458651|gb|CD799825.1|CD799825
EST:     TGGACAAGAAACTTACCCAGTCTCAACTTGCTCACAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGC
genomic: TGGACAAGAAACTTACCCAGTCTCAACTTGCT--CAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGC
EST: gi|351027078|gb|FQ439939.1|FQ439939
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352787307|gb|FQ477927.1|FQ477927
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26261581|gb|CA812644.1|CA812644
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110702508|gb|EE081304.1|EE081304
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|71882631|gb|DT031686.1|DT031686
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|30136700|gb|CB922038.1|CB922038
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110371463|gb|EC935506.1|EC935506
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352767842|gb|FQ466051.1|FQ466051
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110730082|gb|EE106758.1|EE106758
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110727035|gb|EE103368.1|EE103368
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAGATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110361544|gb|EC925026.1|EC925026
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110701590|gb|EE079338.1|EE079338
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110376285|gb|EC941335.1|EC941335
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110708355|gb|EE085804.1|EE085804
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110687528|gb|EE065040.1|EE065040
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110693957|gb|EE070642.1|EE070642
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|30129260|gb|CB914599.1|CB914599
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26262731|gb|CA813794.1|CA813794
EST:     CATGCAAGCTCGAATGGACAAGAAAACTTACCCAGTCTCAATTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: CATGCAAGCTCGAATGGACAAG-AAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|34416272|gb|CF415026.1|CF415026
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110710400|gb|EE086700.1|EE086700
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|33405747|gb|CF211374.1|CF211374
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26261632|gb|CA812695.1|CA812695
EST:     CATGCAAGCTCGAATGGACAAGAAACTTACCCAAGTCTCAACTTGCTCAG                         ATGATCAATGAGA
genomic: CATGCAAGCTCGAATGGACAAGAAACTTACCCA-GTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGA
EST: gi|32270667|gb|CD719826.1|CD719826
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110406514|gb|EC972090.1|EC972090
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|71889009|gb|DT038064.1|DT038064
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110714431|gb|EE091328.1|EE091328
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110721697|gb|EE098991.1|EE098991
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110730507|gb|EE107663.1|EE107663
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110427201|gb|EC993635.1|EC993635
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|34417096|gb|CF415850.1|CF415850
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|33409962|gb|CF215589.1|CF215589
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|18458670|gb|BM436948.1|BM436948
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352781833|gb|FQ469131.1|FQ469131
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|349826575|gb|FQ418666.1|FQ418666
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110411752|gb|EC977475.1|EC977475
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110707585|gb|EE084154.1|EE084154
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|46918198|gb|CN547527.1|CN547527
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|349827889|gb|FQ422757.1|FQ422757
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110428938|gb|EC995422.1|EC995422
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110715971|gb|EE090542.1|EE090542
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|22013757|gb|BQ798791.1|BQ798791
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|349824312|gb|FQ417723.1|FQ417723
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110701644|gb|EE079448.1|EE079448
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352767910|gb|FQ466119.1|FQ466119
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110707359|gb|EE083701.1|EE083701
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110360974|gb|EC924420.1|EC924420
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|352782673|gb|FQ476753.1|FQ476753
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110706291|gb|EE081688.1|EE081688
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110365378|gb|EC928272.1|EC928272
EST:     TCATGCAAGGTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110687300|gb|EE064600.1|EE064600
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|30134441|gb|CB919779.1|CB919779
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|83274543|gb|DV938640.1|DV938640
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110383202|gb|EC947559.1|EC947559
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|22014900|gb|BQ799934.1|BQ799934
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26262816|gb|CA813879.1|CA813879
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|26262665|gb|CA813728.1|CA813728
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110687086|gb|EE064190.1|EE064190
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110387022|gb|EC951661.1|EC951661
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|110410201|gb|EC975879.1|EC975879
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
EST: gi|22014967|gb|BQ800001.1|BQ800001
EST:     TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAG                         ATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT
genomic: TCATGCAAGCTCGAATGGACAAGAAACTTACCCAGTCTCAACTTGCTCAGgtaaatcttt ... ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctctccactgcactcgtatagaactgcataatgaaatggagcttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA
                                            cttgttt  CT-rich tract
                              ataatgaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatctttctcccttacccaatatgtatcctctccactgcactcgtatagaactgcataatgaaatggagcttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG