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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacacctctttttagaaatctgtttagcttgacaatatggattgatatttcatgtagtttaagttttctaattttgattcctgtgcaggatttagatttggttgattttttatggagttttgacattctaattttgattcctgtgcagGATATAAGTTCTGGATCCCTGTCAGTGCATTGAACTTTTG

Basic information

species Vitis vinifera
transcript Vv12s0028g01550.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373369|gb|EC937597.1|EC937597
EST:     AGAGCTTCCAAATAAGTACCAGAAAGATGCCATTCCCACACTAATTACTG                         GATATAAGTTCTGGATCCCTGTCAGTGTATTGAACTTTTG
genomic: AGAGCTTCCAAATAAGTACCAGAAAGATGCCATTCCCACACTAATTACTGgtaaacacct ... tcctgtgcagGATATAAGTTCTGGATCCCTGTCAGTGCATTGAACTTTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatttggttgattttttatggagttttgacattctaattttgattcctgtgcagGATATAAGTTCTGGATCCCTGTCAGTGCATTGAACTTTTG
                                            ttcctgt  CT-rich tract
                               attctaattttgatt  TA-rich tract