1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agcagggttttactatctttaacatgacttatgctgtttaatacaaccggacattactaccttgaagacaatttacaaatatctttattttgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTGATTGCTTATAAGCTAGCAATGACAACATGGGGTAGATGGATAGACTCC
species | Vitis vinifera |
transcript | Vv12s0028g01360.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|32267841|gb|CD717000.1|CD717000
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|32270623|gb|CD719782.1|CD719782
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|28963567|gb|CB342600.1|CB342600
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|30326328|gb|CD009590.1|CD009590
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|32249128|gb|CD714947.1|CD714947
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|30327945|gb|CD011207.1|CD011207
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTEST: gi|32272513|gb|CD721672.1|CD721672
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
EST: TTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACC ATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
genomic: CTGATATTCAACTCATGGCATTGGTGGCTTCACAGCGGAAGACAACAACCgtgagatatc ... tgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTT
accggacattactaccttgaagacaatttacaaatatctttattttgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTGATTGCTTATAAGCTAGCAATGACAACATGGGGTAGATGGATAGACTCC
tctttattttgttct CT-rich tract
aagacaatttacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcagggttttactatctttaacatgacttatgctgtttaatacaaccggacattactaccttgaagacaatttacaaatatctttattttgttctgcagATGGGATGTTATTCAATACAGGAGAAATACATACAAAGACATGAATCGCTTGATTGCTTATAAGCTAGCAATGACAACATGGGGTAGATGGATAGACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - -acatgac
- - - - - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - - -aatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaata