1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttgtgagaatttgataatggcttgcatttcatgtttcccaaaactcacagaatccagaagtttccagcatttatttttaatcatggttctaattatccaacttattggttttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCAACCAAGTTTGCAGCTTTACCATGGAGGTTTGGACGTCAGAGTGTAATC
species | Vitis vinifera |
transcript | Vv12s0028g01100.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCEST: gi|110730925|gb|EE108561.1|EE108561
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCEST: gi|37184287|gb|CF603641.1|CF603641
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCEST: gi|110381894|gb|EC937946.1|EC937946
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCEST: gi|26263992|gb|CA815055.1|CA815055
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCEST: gi|110720549|gb|EE096568.1|EE096568
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCEST: gi|110370834|gb|EC934386.1|EC934386
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
EST: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG GTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
genomic: TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAGgtaagttgtg ... tttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGC
cagcatttatttttaatcatggttctaattatccaacttattggttttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCAACCAAGTTTGCAGCTTTACCATGGAGGTTTGGACGTCAGAGTGTAATC
ttctaat putative branch site (score: 2)
ttttgtt putative PPT
tttatttttaatcatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtgagaatttgataatggcttgcatttcatgtttcccaaaactcacagaatccagaagtttccagcatttatttttaatcatggttctaattatccaacttattggttttgttaaagGTTCATTAAAGAAAGAAAAGAAAAGAATCCAGAAGTGGAGGTTGCTGTTGCAACCAAGTTTGCAGCTTTACCATGGAGGTTTGGACGTCAGAGTGTAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG