Sequence
atgc intronic sequence ATGC exonic sequence...aatggctaacaaccttctccttgtggcagtgtttacattacctcctgttatccaatctgagaagcaagtatatgtttcatattttgatgtgttttgacagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G14050.1 (Glycine max), 3'ss of exon 3
-----aatggctaacaaccttctccttgtggcagtgtttacattacctcctgttatccaatctgagaagcaagtatatgtttcatattttgatgtgttttg--acagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
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ccttatacattcaacaaccattttctgatctgcat-tctacatcactttgttttatctgtt----gaagtc--tttatttcttatgttttgatatttattgctacagGTTTCTGTTGGTTACTTCATTGCTGATCTAGGGACGATATTATGGTTTTTTCCTTCTCTTGGTGGATATGAGTAT
upper sequence: Vv12s0028g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G41750.1 (Glycine max), 3'ss of exon 5
------aatggctaacaaccttctccttgtggcagtgtttacattacctcctgttatccaatctgagaagcaagtatatgtttcatattttg-atgtgttttgacagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
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tccttatacattcaacaaccattttctgatc-tgctttctgcatcactttgttttatcagtt----gaagtc--tttatttcttgtgtttgatatttattgtgacagGTTTCTGTTGGTTACTTCATTGCTGATCTAGGGACAATATTATGGTTTTTTCCTGCTCTTGGTGGATATGAGTAT
upper sequence: Vv12s0028g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G45240.3 (Glycine max), 3'ss of exon 4
---aatggctaacaaccttctccttgtggcagtgtttacattacctcctgttatccaatctgagaagcaagtatatgtttcatattttgatgt-gttttgacagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
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atatatatcttatg-tttatagatcatattatgagctgcaacacatttttgttttta-tctggtcatgaaatttgtatt--atgttttaatttcaatgtgacagGTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTAT
upper sequence: Vv12s0028g01000.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA14G03520.1 (Glycine max), 3'ss of exon 3
aatggctaacaaccttc--tccttgtggcagtgtttacattacctcctgttatccaatctgagaagcaagtatatgtttcatattttgatgtgttttgacagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
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-atatcttacgtttatagatcatcatattatgagctgcaacacatttttgttttta-tctggtcatgaaatttgtattatattttagtttttaatgtgacagGTGTCTGTCGGTTACTTCATCGCTGACCTTGGGATGATATTTTGGTTTTTTCCTTCTCTTGGTGGATATGAGTAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttatccaatctgagaagcaagtatatgtttcatattttgatgtgttttgacagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
ttttgat putative branch site (score: 4)
tatatgtttcatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatggctaacaaccttctccttgtggcagtgtttacattacctcctgttatccaatctgagaagcaagtatatgtttcatattttgatgtgttttgacagGTTTCTGTTGGTTACTTCCTTGCTGATCTTGGGATGATATGTTGGTTTTATCCATCCCTAGGCGGAATGGAGTAT
- - -ctaacaa
- - - - - - ccttctc
- - - - - - - - - -cttgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagcaa