1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcgcatcacattttcttgaattagtccagtcttacagggataatgagctttcttttcctctttttcccctccttgtttcccatgtgattgatgtccaaaaagtattcatttttaagcacctgcttttgatgggctaatctgttcaaattctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTTTAAGCATTGCAGAAGCAGCTTGGCATTCCAGGGAGTCAACCTCGGAAAC
species | Vitis vinifera |
transcript | Vv11s0149g00140.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAG CTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTTEST: gi|71862946|gb|DT012001.1|DT012001
genomic: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAGgttcgcatca ... attctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTT
EST: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAG CTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTTEST: gi|71862783|gb|DT011838.1|DT011838
genomic: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAGgttcgcatca ... attctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTT
EST: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAG CTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTTEST: gi|71864041|gb|DT013096.1|DT013096
genomic: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAGgttcgcatca ... attctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTT
EST: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAG CTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTT
genomic: TGGTGCATCTGGAGTCTCTGGAGGACTCCTTCACCCTTATTCACCTAAAGgttcgcatca ... attctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTT
gtattcatttttaagcacctgcttttgatgggctaatctgttcaaattctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTTTAAGCATTGCAGAAGCAGCTTGGCATTCCAGGGAGTCAACCTCGGAAAC
ggctaat putative branch site (score: 3)
atttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgcatcacattttcttgaattagtccagtcttacagggataatgagctttcttttcctctttttcccctccttgtttcccatgtgattgatgtccaaaaagtattcatttttaagcacctgcttttgatgggctaatctgttcaaattctagcagCTAAGCTTCTCTGGCGGGGTGCTGAGTGCTGGAAAGAGTCTTTAAATCTTTTAAGCATTGCAGAAGCAGCTTGGCATTCCAGGGAGTCAACCTCGGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT