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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttatctctgattcttgcaatgattgttttctattaactagtttcttaatgttttcttcagttcaataactttgcttcctgatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATGGATGGCACATCTTATGCGGCTGAGGATTTAAAGAAATGTCTTGAGGGTT

Basic information

species Vitis vinifera
transcript Vv11s0103g00120.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT3G58140.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttcttatctctgattcttgcaatgattgttttctattaactagtttcttaatgttttcttcagttcaataactttgcttcctgatcat-gcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATGGATGGCACATCTTATGCGGCTGAGGATTTAAAGAAATGTCTTGAGGGTT
        | |   |||||||   |   ||| || |  |   |    | |   ||||||  ||         | | || ||  |    ||  |||||||||||| || |||| ||||  || |  || ||| | |  ||||| | ||||  ||| |  ||||| ||||||||||| ||||||||||||||||| |
-------gtgttctattcttgaggtccctgtgtttttct---tttactttggctgttttgctcgacaggtgtattatgttttttatctattacagATGGAAGGTTTTTGTGTTTTCTCTCCTGAGGACTGGAACGGGTCTGGCAAGGATTCCACTTTGTATGCTGCTGAGGATTTGAAGAAATGTCTTGAGGGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352798745|gb|FQ478380.1|FQ478380
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|352790555|gb|FQ478194.1|FQ478194
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|77578106|gb|DV217823.1|DV217823
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349825743|gb|FQ421842.1|FQ421842
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351054533|gb|FQ452009.1|FQ452009
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351044982|gb|FQ449236.1|FQ449236
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|352790299|gb|FQ481498.1|FQ481498
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349813045|gb|FQ411285.1|FQ411285
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349819738|gb|FQ402675.1|FQ402675
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351045887|gb|FQ441270.1|FQ441270
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351027076|gb|FQ439937.1|FQ439937
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349808821|gb|FQ406671.1|FQ406671
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351045846|gb|FQ441031.1|FQ441031
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351032114|gb|FQ460371.1|FQ460371
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|352786352|gb|FQ478961.1|FQ478961
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351053292|gb|FQ459160.1|FQ459160
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351049456|gb|FQ450057.1|FQ450057
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351048459|gb|FQ448733.1|FQ448733
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTATTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|352764072|gb|FQ467642.1|FQ467642
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351032730|gb|FQ462444.1|FQ462444
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|352789829|gb|FQ478644.1|FQ478644
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351052538|gb|FQ456386.1|FQ456386
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349807616|gb|FQ402007.1|FQ402007
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351048130|gb|FQ442100.1|FQ442100
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351052564|gb|FQ456412.1|FQ456412
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351043334|gb|FQ451386.1|FQ451386
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351018426|gb|FQ439238.1|FQ439238
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|33406238|gb|CF211865.1|CF211865
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCGCTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351027010|gb|FQ439870.1|FQ439870
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351019220|gb|FQ429380.1|FQ429380
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349815992|gb|FQ403595.1|FQ403595
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349808786|gb|FQ406636.1|FQ406636
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349814979|gb|FQ410202.1|FQ410202
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|349830653|gb|FQ416951.1|FQ416951
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
EST: gi|351038109|gb|FQ465226.1|FQ465226
EST:     TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAG                         ATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG
genomic: TTTATCGTAGAGATTCCATTGATTCAACTCACTACCCTGTTTTTCATCAGgtttcttatc ... gatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactagtttcttaatgttttcttcagttcaataactttgcttcctgatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATGGATGGCACATCTTATGCGGCTGAGGATTTAAAGAAATGTCTTGAGGGTT
                                       cttcctg  CT-rich tract
      tttcttaatgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttcttatctctgattcttgcaatgattgttttctattaactagtttcttaatgttttcttcagttcaataactttgcttcctgatcatgcagATGGAAGGTGTTCGTGTCTTCTTGCCAGGTGATTGGGAGGCATCTGGAATGGATGGCACATCTTATGCGGCTGAGGATTTAAAGAAATGTCTTGAGGGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA