Sequence
atgc intronic sequence ATGC exonic sequence...atcttaaaatgtcaaagctttggctctcaacaaatattgttaattatttgttcaatgaaatatttttcatgtcctatttgttgtatttatctgctggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G03070.1 (Glycine max), 3'ss of exon 3
atcttaaaatgtcaaagctttggctctcaacaaatattgttaattatttgttcaatgaaatatttttcat-gtcctatttgttg---tatttatctgctggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
|| | | ||| || | || ||| || | || | ||| | | ||| | ||||| | | | |||||| || |||| ||| | | ||| |||||||||||| ||||||||||||||||||| |||| |||| || || |||||||||||||||||||||||| |||| |||||
-cattgcataggcaa--ctgtaactaaaaactaaaagaaaaaacgtgtaaggaaattgcctctattttaccatcctaatcatcacactgtttatcaa-tgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGGCTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATA
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA05G36500.2 (Glycine max), 3'ss of exon 3
atcttaaaatgtcaaagctttggctctcaacaaatattgttaattatttgttcaatgaaatatttttcatgtcctatttgttgtatt--tatctgctggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
| | | | ||| | | | | ||| | | | | | | || ||| ||||| | ||| | || || |||| ||| | | ||| |||||||||||| ||||||||||||||||||| |||| |||| || || |||||||||||||||||||||||| |||| |||||
--ttgcataggccaatgtatctaaaaactaaaaagaaaaaaactggtaaggaaattgtctctactttaccatcctaaccatcacattgtttattgatgctagGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGGGGACTCGCTTTTCTTCATGGTGCAGAAAGGCCTATTATATA
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT2G07180.2 (Arabidopsis thaliana), 3'ss of exon 4
---------------------------------------------------------------------atcttaaaatgtcaaagctttggctctcaacaaatattg-ttaattatttgttca------atgaaatatttttcatgtccta-tttgttgtattt----atctgct-ggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
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gtaagtttatttcatattcatcgcatatacgtgactaaaggtggaacgtatggatggtttatacagattagttcttagtgtcattataagtatcttgaagaggaattgataaagcatatgttcccatattataaagaaggagtagtgacgaaatgtgtcgtcttttcgaattcacttgacagGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAGATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgttcaatgaaatatttttcatgtcctatttgttgtatttatctgctggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
tttatct CT-rich tract
ttcaatgaaatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atcttaaaatgtcaaagctttggctctcaacaaatattgttaattatttgttcaatgaaatatttttcatgtcctatttgttgtatttatctgctggtagGGGTGTGTGCTACACTGACTTGGTCAACAAGAATGAAGATTGCTTTAGATGCAGCAAAAGGTCTTGCTTTTCTTCATGGTGCAGAAAGGTCTATCATATA
- cttaaaa
- - - - - - caaagct
- - - - - - - - - - - -ctctcaa
- - - - - - - - - - - - - - - caaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa