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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agacacctagggtttaatttaacttgtttttgttgttgatgcttctaactttttcttttttaatatggaactcttactcaagccataatgtttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAGGTTAATATCATACAATAATAAG

Basic information

species Vitis vinifera
transcript Vv11s0065g00320.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043926|gb|FQ431357.1|FQ431357
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351031738|gb|FQ459995.1|FQ459995
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351021488|gb|FQ446032.1|FQ446032
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|110731755|gb|EE106442.1|EE106442
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|352794354|gb|FQ481585.1|FQ481585
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|161709367|gb|FC059696.1|FC059696
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|110385861|gb|EC950417.1|EC950417
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349822011|gb|FQ408340.1|FQ408340
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAGCCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351026847|gb|FQ436500.1|FQ436500
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351025243|gb|FQ433660.1|FQ433660
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351045391|gb|FQ447656.1|FQ447656
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351041115|gb|FQ444092.1|FQ444092
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351022613|gb|FQ447135.1|FQ447135
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351040449|gb|FQ434582.1|FQ434582
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAGCCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349809487|gb|FQ414377.1|FQ414377
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAGCCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349824245|gb|FQ417632.1|FQ417632
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTGCTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351016593|gb|FQ424020.1|FQ424020
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|110689479|gb|EE065738.1|EE065738
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|352786908|gb|FQ481283.1|FQ481283
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351043726|gb|FQ431079.1|FQ431079
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351025600|gb|FQ426614.1|FQ426614
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351025823|gb|FQ427835.1|FQ427835
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351038974|gb|FQ457649.1|FQ457649
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCGCAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351018428|gb|FQ439240.1|FQ439240
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|37183940|gb|CF603294.1|CF603294
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351036694|gb|FQ457407.1|FQ457407
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351031403|gb|FQ445428.1|FQ445428
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351029736|gb|FQ427576.1|FQ427576
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351032941|gb|FQ461830.1|FQ461830
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAGCCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349829562|gb|FQ420094.1|FQ420094
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|294965672|gb|GW837271.1|GW837271
EST:     GATTCCCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCGACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351051948|gb|FQ450639.1|FQ450639
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351024691|gb|FQ433106.1|FQ433106
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351017168|gb|FQ424595.1|FQ424595
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351017430|gb|FQ435783.1|FQ435783
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351017804|gb|FQ436157.1|FQ436157
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349827569|gb|FQ422437.1|FQ422437
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|156725857|gb|EV229968.1|EV229968
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349812437|gb|FQ407056.1|FQ407056
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAACACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351037015|gb|FQ460725.1|FQ460725
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|110699436|gb|EE076435.1|EE076435
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|352786494|gb|FQ479103.1|FQ479103
EST:     GATTCTCAAATTTTATCT-ATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|294964049|gb|GW837852.1|GW837852
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349824515|gb|FQ413182.1|FQ413182
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351053908|gb|FQ441674.1|FQ441674
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349825823|gb|FQ423118.1|FQ423118
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|352790114|gb|FQ481313.1|FQ481313
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351055242|gb|FQ440581.1|FQ440581
EST:     GATTCTCAAATTTTATCTGATTATGTGCGCTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349809005|gb|FQ407454.1|FQ407454
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTACCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349813553|gb|FQ413787.1|FQ413787
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351024243|gb|FQ423666.1|FQ423666
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349814982|gb|FQ410205.1|FQ410205
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCCGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|161715904|gb|FC065505.1|FC065505
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCAGTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351031621|gb|FQ459878.1|FQ459878
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|352794401|gb|FQ481632.1|FQ481632
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAGCCTGCCACTGCCAAGGTTGCTGCAACCCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|30304254|gb|CB981048.1|CB981048
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351013648|gb|FQ429789.1|FQ429789
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|71888991|gb|DT038046.1|DT038046
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351021529|gb|FQ446073.1|FQ446073
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|161719520|gb|FC066431.1|FC066431
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|110382788|gb|EC947109.1|EC947109
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349812407|gb|FQ406428.1|FQ406428
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349810332|gb|FQ401778.1|FQ401778
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTATCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|351043642|gb|FQ451573.1|FQ451573
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349830158|gb|FQ420418.1|FQ420418
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTCGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|71869506|gb|DT018561.1|DT018561
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|34544506|gb|CF512738.1|CF512738
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|349824484|gb|FQ413151.1|FQ413151
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
EST: gi|71874115|gb|DT023170.1|DT023170
EST:     GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC                         TATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG
genomic: GATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACACgtaagtgaat ... tttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taactttttcttttttaatatggaactcttactcaagccataatgtttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAGGTTAATATCATACAATAATAAG
     ttttcttttttaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agacacctagggtttaatttaacttgtttttgttgttgatgcttctaactttttcttttttaatatggaactcttactcaagccataatgtttcatgcagTATACAGCTTGGGCAACCTGCCACTGTCAAGGTTGCTGCAAACCTTGTCAGGTTAATATCATACAATAATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- acaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaagc