Sequence
atgc intronic sequence ATGC exonic sequence...ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcattagtgtttgaatcgtggaataatttgtgtgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G147726_T01 (Zea mays), 3'ss of exon 2
ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcattagtgtttgaa-tcgtggaataatttgtg-tgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
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---------------gtgagttctgattta---ccgagtcgtcattcctg--ttgctggttgaagttgttggatttgatgtggtgccccgcgtgtgttgcagCAATTGGATTCAACGTTGAGACGGTGCAGTACAACAACATCAAGTTCCAAGTATGGGATCTTG
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S78_17V6.1 (Physcomitrella patens), 3'ss of exon 2
---ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcattagtgtttgaatcgtggaataatttgtgtgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
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aaacttagaggctttgacgtgtatatgcatgttacctccattcgtcccagacgtgtt-gtgtgcatacctgatcgcaattcctgtatt-gtggtggt-tgcagCTATTGGCTTTAATGTGGAGACTGTGCAATACAACAATATTAAATTTCAAGTTTGGGATCTAG
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ14920 (Selaginella moellendorffii), 3'ss of exon 2
ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcatt--agtgtttgaatcgtgga-ataatttgtgtgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
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------------------------------------gtgagtgagatttgcattttaggtcttggatctagctcacaagttctctcttcctg-tctcttccagCGATAGGATTCAATGTAGAAACCGTACAGTACAACAACATCAAATTTCAAGTATGGGACTTGG
upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: EFJ37645 (Selaginella moellendorffii), 3'ss of exon 2
ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcatt--agtgtttgaatcgtgga-ataatttgtgtgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
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------------------------------------gtgagtgagatttgcattttaggtcttggatctagctcacaagttctctcttcccg-tctcttccagCGATAGGATTCAATGTAGAAACCGTACAGTACAACAACATCAAATTTCAAGTATGGGACTTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acgggcattagtgtttgaatcgtggaataatttgtgtgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
aataatttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctttaaatttaaattttccctttttatttgaagcctaggaaccaaacgggcattagtgtttgaatcgtggaataatttgtgtgtttatggtttcatgcagCAATTGGCTTCAATGTGGAAACAGTACAGTACAATAATATCAAATTTCAAGTATGGGATCTGG
- - - - - - - - -ccctttt
- - - - - - - - - - - - - - tgaagcc
- - - - - - - - - - - - - - - - - - - gaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - ggcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt