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...aaaaaaaaaaggatttttgaatgggaaatatgatcgcaaatgggcccttaatattatacaatttcgggtttttgttcttatgacttggttaattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTTGCAGAG
species | Vitis vinifera |
transcript | Vv11s0052g00880.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCEST: gi|37183853|gb|CF603207.1|CF603207
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCC
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGEST: gi|352782404|gb|FQ470307.1|FQ470307
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCG
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTT-TTGGCTAC CTATGGAGATGGTGAGCCCACCGATAACGCGEST: gi|352768454|gb|FQ469630.1|FQ469630
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCG
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAAGGTTT-ATAAGTGGTEST: gi|161721502|gb|FC069730.1|FC069730
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCA-GGTTTTATAAGTGGT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|352768225|gb|FQ469400.1|FQ469400
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|352774217|gb|FQ474740.1|FQ474740
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|352776602|gb|FQ474904.1|FQ474904
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCT-CTTGGCTAC CTATGGAGATGGTGAGCEST: gi|352777575|gb|FQ466628.1|FQ466628
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGC
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|352781981|gb|FQ469279.1|FQ469279
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCCACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|71863842|gb|DT012897.1|DT012897
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|352782151|gb|FQ470053.1|FQ470053
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTEST: gi|352772720|gb|FQ473758.1|FQ473758
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
EST: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTAC GTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
genomic: TATGAAGAGAAATTGAAGAAGGAAACTTTGGCTTTCTTCTTCTTGGCTACgtaagcttaa ... aattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTT
ccttaatattatacaatttcgggtttttgttcttatgacttggttaattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTTGCAGAG
ggttaat putative branch site (score: 4)
atattatacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaaaaaaggatttttgaatgggaaatatgatcgcaaatgggcccttaatattatacaatttcgggtttttgttcttatgacttggttaattggttagGTATGGAGATGGTGAGCCAACCGATAACGCGGCCAGGTTTTATAAGTGGTTTGCAGAG
aaaaaaa
- - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - -gcaaatg
- - - - - - - - - - - - - - - - - - - - - - cccttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg