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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttggtggtctactgatttgttgtgctagatggtgtagcccttttattaaaagtacattttcctactaacttctcttagtttctgattgatcatttaccatggttccatctgactccacagCCATCTTTATCCCCACGCCGTCTCTGTTTGTTCAACACTACAACTGGAGCTGCCCTCCGAGAACTAAATTTTTTAACTTCTGTCCTTGCCATTCGTCTAA

Basic information

species Vitis vinifera
transcript Vv11s0037g00970.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00970.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G07800.1 (Glycine max), 3'ss of exon 3
gtgcttggtggtctactgatttgttgtgctagatggtgtagcccttttattaaaagtacattttcctactaacttctcttagtttctgattg---atcatttaccatggttccatctgactccacagCCATCTTTATCCCCACGCCGTCTCTGTTTGTTCAACACTACAACTGGAGCTGCCCTCCGAGAACTAAATTTTTTAACTTCTGTCCTTGCCATTCGTCTAA
                                                 |    | || | | | ||          ||  |  ||||| ||   ||  |||    || | |    ||      ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||||||| ||  ||||| | |||||| |||||||  | |||||  ||||  | |
-----------------------------------------------gttccgtactatactgtacttgggctcgggctcgggctctgactgtgtattgttttgactgatacatgatgcacatgcagCCATCTTTGTCCCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA

upper sequence: Vv11s0037g00970.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G36960.2 (Glycine max), 3'ss of exon 2
gtgcttggtggtctactgatttgttgtgctagatggtg-tagcccttttattaaaagtacattttccta---ctaa--cttctcttagtttctgatt--gatcatttaccatggttccatctgactc----------cacagCCATCTTTATCCCCACGCCGTCTCTGTTTGTTCAACACTACAACTGGAGCTGCCCTCCGAGAACTAAATTTTTTAACTTCTGTCCTTGCCATTCGTCTAA
|| ||     ||   |  | | | | |||||   | |  || |    |||      || | |   |||    ||    ||   ||  |  || |  |  |||  | |    | |||    ||||  |            ||||||||||| || || |||||||| ||||| ||||| || || ||||||||||| ||  ||||| | |||||| |||||||  | |||||  ||||  | |
gtactgtactgtaatcaaactagctttgctaatggctactatctaccttaccgtgtgtgcttgggcctgggcctgggcctgggctcgggctcgggctctgatagtgtgttgttgttttgactgatgcatgatgcacgtgcagCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttctcttagtttctgattgatcatttaccatggttccatctgactccacagCCATCTTTATCCCCACGCCGTCTCTGTTTGTTCAACACTACAACTGGAGCTGCCCTCCGAGAACTAAATTTTTTAACTTCTGTCCTTGCCATTCGTCTAA
                       atcattta  TA-rich tract