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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatgagctaataccttgttgtggtttagttttagttacttctatcatcctatttctttaatgctgcatatatatactgacaaaagtctcaccttctcatcatatagATTAAAGGAAAACTGGGCCAAAACTGGGAAGGTATGGATGAAGATCAGAAGGACGAGATTTTATCACAAAGTTACCCTATTACAGAGAATTCTAGTGATA

Basic information

species Vitis vinifera
transcript Vv11s0037g00850.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768570|gb|FQ467526.1|FQ467526
EST:     ATGCAGAGATGAAAGCAAGAGATGCCCAAAAGAAGCAAGCTCGTGCAAAG                         ATTAAAGGAAAACTGGGCCAAAACTGGGAAGGTATGGATGAAGATCAGAAG
genomic: ATGCAGAGATGAAAGCAAGAGATGCCCAAAAGAAGCAAGCTCGTGCAAAGgtcatgagct ... catcatatagATTAAAGGAAAACTGGGCCAAAACTGGGAAGGTATGGATGAAGATCAGAAG
EST: gi|352773143|gb|FQ470758.1|FQ470758
EST:     ATGCAGAGATGAAAGCAAGAGATGCCCAAAAGAAGCAAGCTCGTGCAAAG                         ATTAAAGGAAAACTGGGCCAAAACTGGGAAGGTATGGATGAAGATCAGAAG
genomic: ATGCAGAGATGAAAGCAAGAGATGCCCAAAAGAAGCAAGCTCGTGCAAAGgtcatgagct ... catcatatagATTAAAGGAAAACTGGGCCAAAACTGGGAAGGTATGGATGAAGATCAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctttaatgctgcatatatatactgacaaaagtctcaccttctcatcatatagATTAAAGGAAAACTGGGCCAAAACTGGGAAGGTATGGATGAAGATCAGAAGGACGAGATTTTATCACAAAGTTACCCTATTACAGAGAATTCTAGTGATA
                                  tctcaccttctcatc  CT-rich tract
 atatatatact  TA-rich tract