Sequence
atgc intronic sequence ATGC exonic sequencegtatatggattgagcagattaatttttcattagtagctagctgcattcagccttgtgtgcctgatctttatagaatcaccaattccatgatgtacacagCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA02G36600.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------gtatatggat-tgagcagat-taatttttcattagtagctagctgcattcagccttgtg----tgcctgatctttatag--aatcacca-----attccatgat--gtacacagCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG
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gtataagcattgttgaagttaatttaattgtcatttgtcacagcacgagcatatatatatatatatatatatatatatatatatatatatatatatatatatccattttcataactacccttgttctatatcactaattaccatgagaattccgaatttgtcacacagCTCAGGATGCACTGATTTTTGTAATTAGATGGATGTCAAGATTTCCACAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAG
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G08090.1 (Glycine max), 3'ss of exon 5
---------------gtatatggattgagcagattaatttttcattagtagctagc-tgcattcagccttgtg----tgcctgatctttatag--aatcacca-----attccatgatg--tacacagCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG
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gtatatacgaatctaaagcattgttgatgttaatttaattgtcagcatttgccaccacatatccattttcataacttcccttgttctatatcactaattaccataagaattccaaatttataacacagCTCAGGATGCACTGGTTTTTCTAATTAGATGGATGTCAAGATTTCCTCAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAG
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: PP1S74_236V6.1 (Physcomitrella patens), 3'ss of exon 3
--gtatatggattgagcagattaatttttcattagtagctagct-gcattcagccttgtgtgcctgatctttatagaat-caccaattccatgatgtacacagCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG-------
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tcctcttcaggtgtag-aaatcagcgattcgtatgaacctccccagtaactaaatacttaatccccgcggtgatatgacgcaagagaatcgtgttttgca--gCCGATGATAACTACCATTTCTTACTCAACTGGTTCGAGCGATTTCCACAATACAAACACCGAGATTTCTACATTGCAGGAGAGAGCTATGCCGGCCATTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351027932|gb|FQ425833.1|FQ425833EST: CTACACAAATACAAGCTCCAATCTCAAAAACTCCGGTGATCGACGAACAG CTCAGGATGCTTTAANNNNNNNNGGTGAGATGGATGTCAAGATTCCCAAAA
genomic: CTACACAAATACAAGCTCCGATCTCAAAAACTCCGGTGATCGACGAACAGgtatatggat ... atgtacacagCTCAGGATGCTTTAATTTTTTT-GGTGAGATGGATGTCAAGATTCCCAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcagccttgtgtgcctgatctttatagaatcaccaattccatgatgtacacagCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG
gcctgat putative branch site (score: 4)
tttatagaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
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gtatatggattgagcagattaatttttcattagtagctagctgcattcagccttgtgtgcctgatctttatagaatcaccaattccatgatgtacacagCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG