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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaatcacttggagaattctgaatatgaatttctattccctcacaattgcaaatacaatttaactccaaagtagtggaatttattaagcatctttttgctgcatttggcagGATTTTGGATAATCTTCCACTTATTGTTCCTGTACGAAGGCCAGATCAGGAACTTTCCACAGTGTATCAACATGGTTTCTATGTTGGTCTCAGGGGACAG

Basic information

species Vitis vinifera
transcript Vv11s0037g00210.t01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713316|gb|EE089129.1|EE089129
EST:     ACTGCAAAGGAGTTCAAGGAAAAGATAGATGATGAGTATCGGGTTAACAT                         GATTTTGGATAATCTTCCACTTATTGTTCCTGTACGAAGGCCAGATCAGGA
genomic: ACTGCAAAGGAGTTCAAGGAAAAGATAGATGATGAGTATCGGGTTAACATgtgaggaatc ... catttggcagGATTTTGGATAATCTTCCACTTATTGTTCCTGTACGAAGGCCAGATCAGGA
EST: gi|161716766|gb|FC067205.1|FC067205
EST:     ACTGCAAAGGAGTTCAAGGAAAAGATAGATGATGAGTATCGGGTTAACAT                         GATTTTGGATAATCTTCCTCTTATTGTTCCTGTACGAAGGCCAGATCAGGA
genomic: ACTGCAAAGGAGTTCAAGGAAAAGATAGATGATGAGTATCGGGTTAACATgtgaggaatc ... catttggcagGATTTTGGATAATCTTCCACTTATTGTTCCTGTACGAAGGCCAGATCAGGA
EST: gi|161708499|gb|FC056569.1|FC056569
EST:     GGAAAAGATAGATGATGAGTATCGGGTTAACAT                         GATTTTGGATAATCTTCCTCTTATTGTTCCTGTACGAAGGCCAGATCAGGA
genomic: GGAAAAGATAGATGATGAGTATCGGGTTAACATgtgaggaatc ... catttggcagGATTTTGGATAATCTTCCACTTATTGTTCCTGTACGAAGGCCAGATCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttaactccaaagtagtggaatttattaagcatctttttgctgcatttggcagGATTTTGGATAATCTTCCACTTATTGTTCCTGTACGAAGGCCAGATCAGGAACTTTCCACAGTGTATCAACATGGTTTCTATGTTGGTCTCAGGGGACAG
 atttaac  putative branch site (score: 3)
                     aatttattaagcat  TA-rich tract