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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcacttggatttttgtgtagtttctttgaagtgcaagaattttaagttgaattttctagggatcatttcatgtatgggctgtttggattgacactaaaaatcaaacttgatcatatacagGCAATTGTCTGGTTCCATCTTCATGAATATGGAAAGGCACTGTCAGTTTTGGAATCACTATATCAAAATATTGAACCCATAGATGAG

Basic information

species Vitis vinifera
transcript Vv11s0016g05820.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g05820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA13G22920.1 (Glycine max), 3'ss of exon 2
gtatgttcacttggatttttgtgt-agtttctttgaagtgcaagaattttaagttgaattttctagggatcatttcatgtatgggctgtttggattgacactaaaaatcaaacttgatcatatacagGCAATTGTCTGGTTCCATCTTCATGAATATGGAAAGGCACTGTCAGTTTTGGAATCACTATATCAAAATATTGAACCCATAGATGAG
||||||||| || | |  || | | | |||| || |  | |     | ||   |||||| |    | |||    | || ||||  ||| |     |     ||          || | | | |  |||||||  | ||||||||||||||||| |||| |||| || |||||||||||||| | || | |||||||||||||||||||||||||
gtatgttcattttgctccttatattaatttcatttatat-ctctcttgttgctttgaatgtat--gtgatttaattatatatg--ctgatgtagcttttgtta---------tttcaacctctttagGCAATCATTTGGTTCCATCTTCATGACTATGCAAAGACATTGTCAGTTTTGGAACCTCTCTTTCAAAATATTGAACCCATAGATGAG

upper sequence: Vv11s0016g05820.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA17G11950.1 (Glycine max), 3'ss of exon 3
gtatgttcacttggatttttgtgt-agtttctttgaagtgcaagaattttaagttgaattttctagggatcatttcatgtatgggctgtttggattgacactaaaaatcaaacttgatcatatacagGCAATTGTCTGGTTCCATCTTCATGAATATGGAAAGGCACTGTCAGTTTTGGAATCACTATATCAAAATATTGAACCCATAGATGAG
||||||||| || | |  || | | | |||| ||    | ||     |||  ||||  ||   |     | | || ||        | | |   |||| |   |   |   | || |   | |  |||| || || ||||||||||||||||| ||||  ||| || |||||||||||||| | || | |||||||||||||||||||||||||
gtatgttcattttgctccttatattaatttcatt----taca-----tttctgttgctttgaatgaatgtgacttaat--------tatctttgttgatatggattttgttatttcaatctctttagGCGATCGTTTGGTTCCATCTTCATGACTATGTGAAGACATTGTCAGTTTTGGAACCTCTCTTTCAAAATATTGAACCCATAGATGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatgtatgggctgtttggattgacactaaaaatcaaacttgatcatatacagGCAATTGTCTGGTTCCATCTTCATGAATATGGAAAGGCACTGTCAGTTTTGGAATCACTATATCAAAATATTGAACCCATAGATGAG
                             taaaaatcaaactt  TA-rich tract