1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatatttaacatacaatttttgtaaagaaattaactaatgaaattggagaatccaatattttcttgtgcttaatgtgttgcctggctttggtgtttcagTTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTACAACTGCCAAGGTGCAGCCTGGAACAGCGCTGAAAGAAAGAACACATTC
species | Vitis vinifera |
transcript | Vv11s0016g05770.t01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCCCACCCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAG TTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTAEST: gi|110720334|gb|EE096164.1|EE096164
genomic: GCCCCACCC-GGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAGgtatatttaa ... ggtgtttcagTTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTA
EST: CGCCCCACCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAG TTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTAEST: gi|37184787|gb|CF604141.1|CF604141
genomic: CGCCCCACCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAGgtatatttaa ... ggtgtttcagTTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTA
EST: CGCCCCACCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAG TTTGTTGAAGAEST: gi|110698330|gb|EE075722.1|EE075722
genomic: CGCCCCACCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAGgtatatttaa ... ggtgtttcagTTTGTTGAAGA
EST: CGCCCCACCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAG TTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTA
genomic: CGCCCCACCCGGGATTGTTTGTTCTCTGACCCCGCCCGCGATGGTATCAGgtatatttaa ... ggtgtttcagTTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTA
tggagaatccaatattttcttgtgcttaatgtgttgcctggctttggtgtttcagTTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTACAACTGCCAAGGTGCAGCCTGGAACAGCGCTGAAAGAAAGAACACATTC
gcttaat putative branch site (score: 4)
aatattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttaacatacaatttttgtaaagaaattaactaatgaaattggagaatccaatattttcttgtgcttaatgtgttgcctggctttggtgtttcagTTTGTTGAAGATATGGAACATGAATAAGTACACTGGAGTGATTGGAGTGTACAACTGCCAAGGTGCAGCCTGGAACAGCGCTGAAAGAAAGAACACATTC
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